PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g14780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ZF-HD
Protein Properties Length: 300aa    MW: 33659.2 Da    PI: 7.9653
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g14780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.9e-3272129260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  + vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e+e e
   CA08g14780  72 KMVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEMEGE 129
                  679**************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2474137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.8E-2974126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-3175126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.29576125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-30217287IPR009057Homeodomain-like
SuperFamilySSF466892.82E-18218286IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-26225281IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELPSQEEDM PIPINSTYVG GGHGHGHGHM IHHDPTPPPN NTNHIIPPSM NGPPIDAAPV  60
AAAPDHHVPF KKMVRYKECL KNHAAAMGGT ATDGCGEFMP SGEEGTIEAL ICSACNCHRN  120
FHRKEMEGEQ QQHLQLPSSC DCYHLNRGGG KKVYLGHNNH HHKALLGPEP FGTIIPTRPP  180
PHHQMIMSYN MGSLPNSESE EHDQDHAGIM AMARPLHHHH HHHVKKRFRT KFTQEQKDKM  240
LNFAEKVGWK IQKQEEAVVQ QFCQEVGVKR RVLKVWMHNN KHSLAKKNSN NIIPHENQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242262831875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-41HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538942.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-77ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1U8DVA80.0A0A1U8DVA8_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y1Q60.0A0A2G2Y1Q6_CAPAN; zinc-finger homeodomain protein 4
TrEMBLA0A2G3BUX80.0A0A2G3BUX8_CAPCH; Uncharacterized protein
STRINGSolyc01g102980.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-72homeobox protein 31