PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g14200

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 550aa MW: 59008.4 Da PI: 7.6389

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g14200	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.5	1.7e-40	165	271	2	114
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ +a++sk+ CA08g14200 165 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSS-------LTAPPSKS 256 56799****************************************************************999766666666662.......22334444 PP TCP 100 sqksaasalnlakes 114 +++s +sal+la+ + CA08g14200 257 APHSFHSALALAAAH 271 444444444444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.1E-38	170	267	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	171	225	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MELTDLQSNN TNSTSKQQST TPSPPLHHQH QHQHQHQQHQ YQLLSQHHHQ HHQQQQLQQQ 60 QQQQQHGRSS VPFMSSISIQ QPSAPPGLTN SASPSPAAAA TSASPSTSSP TPQQQXXXXP 120 PHLVDASLAI ATRSDSLIDP NKKSQPQQQQ LAIQQTQIVP QPQQPPPKRQ TKDRHTKVDG 180 RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNI 240 SLRSSGSSLT APPSKSAPHS FHSALALAAA HHTPHPFEEG FSHMLGFHQN PHLLTQNPIG 300 ESLPGGGGGG GNSGDGSGGG QEGADNYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ 360 FKGNSSQLPK SNSSQEGVAG PSSNMLRHTN MMPATGLWAV APPPSSGTTG SXGSGQTLSA 420 PMASTSGTTT LESQMWPFHM SSSNTIQAPL HFMPRFNIPP NLEFQSGRGN PLQLGSMLMQ 480 QQQQQPSQHL GLGMSETNLG MLAALNVYSR GGLNINSDHQ SHSLEHHHQQ QQPQPQPTDS 540 DNDDPNNSQ*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MELTDLQSNN TNSTSKQQST TPSPPLHHQH QHQHQHQQHQ YQLLSQHHHQ HHQQQQLQQQ  60
QQQQQHGRSS VPFMSSISIQ QPSAPPGLTN SASPSPAAAA TSASPSTSSP TPQQQXXXXP  120
PHLVDASLAI ATRSDSLIDP NKKSQPQQQQ LAIQQTQIVP QPQQPPPKRQ TKDRHTKVDG  180
RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNI  240
SLRSSGSSLT APPSKSAPHS FHSALALAAA HHTPHPFEEG FSHMLGFHQN PHLLTQNPIG  300
ESLPGGGGGG GNSGDGSGGG QEGADNYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ  360
FKGNSSQLPK SNSSQEGVAG PSSNMLRHTN MMPATGLWAV APPPSSGTTG SXGSGQTLSA  420
PMASTSGTTT LESQMWPFHM SSSNTIQAPL HFMPRFNIPP NLEFQSGRGN PLQLGSMLMQ  480
QQQQQPSQHL GLGMSETNLG MLAALNVYSR GGLNINSDHQ SHSLEHHHQQ QQPQPQPTDS  540
DNDDPNNSQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539042.1	0.0	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A2G2Y1X8	0.0	A0A2G2Y1X8_CAPAN; Transcription factor TCP15
STRING	PGSC0003DMT400064164	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-48	TCP family protein