PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g12420
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 144aa    MW: 15697.5 Da    PI: 10.5848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g12420genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA658.3e-212154134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk+
  CA08g12420 21 CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKK 54
                ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.0991551IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-181565IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-141655No hitNo description
Gene3DG3DSA:3.30.50.101.4E-161763IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.01E-122051No hitNo description
PfamPF003201.3E-182154IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDPIKKEECS GDETSGSTKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKGPTKKK  60
EKPVSNTSSD DLAYCKKDKI GNGKDGKQLS KVLRVKLMML GKEVVILQRQ RSSMKKPRNQ  120
RKLGEVERAA LLLMALSCGS VFA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582254.16e-99PREDICTED: GATA transcription factor 17
TrEMBLA0A1U8HNX01e-97A0A1U8HNX0_CAPAN; GATA transcription factor 17
TrEMBLA0A2G3AXR31e-97A0A2G3AXR3_CAPCH; GATA transcription factor 23
STRINGPGSC0003DMT4000637713e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-17GATA transcription factor 15