PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g10840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GeBP

Protein Properties

Length: 434aa MW: 47251.2 Da PI: 6.0728

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g10840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	101.2	9e-32	88	190	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 klfqrlw+++De+ lL+G++++++++ + + d++afy+ +k++ +++++k+qlveK+rrLKkKf++ ++k+ sgke++f+++h+q +fe+s+ CA08g10840 88 KLFQRLWTDDDEVELLKGFLEYTTQRVLnnssaqQHHYDTTAFYDSIKSKFQLDFNKNQLVEKLRRLKKKFRTLRSKMGSGKEFAFKSAHEQVTFEISS 186 579******************999776555533445********************************************************* PP DUF573 94 kiWg 97 kiWg CA08g10840 187 KIWG 190 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.2E-30	90	190	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MASHHHPGYN DDNLDYDVDV DGDDESNSSP SVVAGEVTIA VAGVSTSDSH APLIQAERKR 60 PRIDDFAIPV ILPGAVAKKP AAVDESRKLF QRLWTDDDEV ELLKGFLEYT TQRVLNNSSA 120 QQHHYDTTAF YDSIKSKFQL DFNKNQLVEK LRRLKKKFRT LRSKMGSGKE FAFKSAHEQV 180 TFEISSKIWG NGGSYARNSP GRGGPIGFPA QHPLEDGGLD DEDAHSNPNP NSDAIVIYNS 240 PKFNLNSNPN PNGPNGIDMK TRSQKRAPQV PAEVLKAEQQ VFQPPGFSPN VPMPSTNVNP 300 MGTTPMVGVA ATAPVAAAPV VGVADTAPVA ASVPSLIEET VRNCVSPIFK ELLNNVANLN 360 RPARGFGFGF GFGGMEMSPI PLGFGGGAMS MEMMKDEKWR KQQMLELEVY SKRLELVQDQ 420 VKAQLEELRS MGS*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MASHHHPGYN DDNLDYDVDV DGDDESNSSP SVVAGEVTIA VAGVSTSDSH APLIQAERKR  60
PRIDDFAIPV ILPGAVAKKP AAVDESRKLF QRLWTDDDEV ELLKGFLEYT TQRVLNNSSA  120
QQHHYDTTAF YDSIKSKFQL DFNKNQLVEK LRRLKKKFRT LRSKMGSGKE FAFKSAHEQV  180
TFEISSKIWG NGGSYARNSP GRGGPIGFPA QHPLEDGGLD DEDAHSNPNP NSDAIVIYNS  240
PKFNLNSNPN PNGPNGIDMK TRSQKRAPQV PAEVLKAEQQ VFQPPGFSPN VPMPSTNVNP  300
MGTTPMVGVA ATAPVAAAPV VGVADTAPVA ASVPSLIEET VRNCVSPIFK ELLNNVANLN  360
RPARGFGFGF GFGGMEMSPI PLGFGGGAMS MEMMKDEKWR KQQMLELEVY SKRLELVQDQ  420
VKAQLEELRS MGS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	2e-51	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	2e-51	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538467.1	0.0	PREDICTED: uncharacterized protein LOC107839480
TrEMBL	A0A2G2YZ18	0.0	A0A2G2YZ18_CAPAN; Uncharacterized protein
STRING	Solyc01g097890.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	4e-52	DNA-binding storekeeper protein-related transcriptional regulator