PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g09860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 452aa MW: 51704.6 Da PI: 6.1502 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.4 | 4e-09 | 67 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse..ng........kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ n+ k+ +fs g ++++e Aa+ ++ a++k++g CA08g09860 67 SIYRGVTRHRWTGRYEAHLWDkGTWnsNQkkkgkqvlKChFQFS-GAYDSEEAAARTYDLAALKYWG 132 57*******************98887433887777765556677.99******************98 PP | |||||||
2 | AP2 | 56.6 | 6.2e-18 | 175 | 226 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++gt eeAa+a++ a+ +++g CA08g09860 175 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYGTQEEAAAAYDMAAIEYRG 226 89****99***********99654...4*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 20 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-12 | 67 | 142 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.84E-16 | 67 | 141 | No hit | No description |
Pfam | PF00847 | 9.6E-7 | 67 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-18 | 68 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.029 | 68 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-11 | 68 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 69 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.47E-16 | 175 | 236 | No hit | No description |
Pfam | PF00847 | 9.1E-13 | 175 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 175 | 236 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-26 | 176 | 240 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-18 | 176 | 234 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.241 | 176 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 216 | 236 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006110 | Biological Process | regulation of glycolytic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0019432 | Biological Process | triglyceride biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MKKSPSFSFS CSSSSSSSSC IEQQIHEVTE NKKMKLKPKP KPKLRPKRAS RAKRIANADS 60 SPTKRSSIYR GVTRHRWTGR YEAHLWDKGT WNSNQKKKGK QVLKCHFQFS GAYDSEEAAA 120 RTYDLAALKY WGPTTILNFP VETYIKEFEE MHRLNKEEYL ASLRRKSSGF SRGVSKYRGV 180 ARHHHNGRWE ARIGRVYGNK YLYLGTYGTQ EEAAAAYDMA AIEYRGPNAV TNFDISRYAD 240 WLKTLREPDL LSQMENTESS NEVQSDEVIV QYQPVQQEEN QEDFMQEELA FEPLFVPKLE 300 FTPALDSDEV TQPKVLKLEF APKMESAAEI IKGKGYQEED DYPWSMYLDN TFGSFQVSDF 360 CLDKPADLMD LFNNTGFDNN INFNLYEQSR EQEFNNLDLF SDSMIIDMVE GNNEEVRNNP 420 SISPTSSTAV SRTTSISSDM KDVGGWTSST K* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 2e-91 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538325.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1U8E4U4 | 0.0 | A0A1U8E4U4_CAPAN; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | PGSC0003DMT400070735 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9134 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 8e-98 | AP2 family protein |