PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g09710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 651aa    MW: 74087.4 Da    PI: 8.4825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g09710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07462503240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE +ll ++v ++++g   +W+ I++++g+ Rt +++
       CA08g09710 462 KPWSKEEVDLLRKGVLKYPKGtsrRWEVISEYIGTARTVEEI 503
                      69********************************99998775 PP

2Myb_DNA-binding28.34.1e-09594637445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  ++ lv+a k ++++   +W+++a  ++ g+t +qck ++ 
       CA08g09710 594 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 637
                      ********************************.********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006253.0E-78199IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.8E-2094197IPR001623DnaJ domain
SuperFamilySSF465654.19E-2096175IPR001623DnaJ domain
SMARTSM002711.4E-1596171IPR001623DnaJ domain
CDDcd062573.00E-1397168IPR001623DnaJ domain
PfamPF002263.3E-1697176IPR001623DnaJ domain
PROSITE profilePS5007618.33497179IPR001623DnaJ domain
PRINTSPR006253.0E-7120135IPR001623DnaJ domain
PRINTSPR006253.0E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.5E-5457503IPR009057Homeodomain-like
PROSITE profilePS512936.505459514IPR017884SANT domain
SMARTSM007175.5E-5460513IPR001005SANT/Myb domain
PfamPF002491.7E-6462503IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-7462505IPR009057Homeodomain-like
CDDcd001674.94E-5463503No hitNo description
PROSITE profilePS512939.524589644IPR017884SANT domain
SMARTSM007171.8E-8590642IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-9592647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-5594636IPR009057Homeodomain-like
PfamPF002492.3E-7594636IPR001005SANT/Myb domain
CDDcd001675.60E-6594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MASKSSVRLI SYSEEIINGE PIYISSNCCP IKANKYEPAG LAFHSAALRL LGHVEKEDPE  60
DGKEDVPNDK EQPFMYSSES YSSKGKKKSS TGEKIQDHYA LLGLSHLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEASKQAKKE EIENHFKAIQ EAYEVLIDPI RRRIYDSTDE  180
FDDEVPTECA PQDFFKVFGP AFLRNGRWSV TQPLPSLGDE NTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEESA RIRTLVDNAY RRDPRILGRK  300
EAEKAEKQRK KEAKILAKKL QEEEAARIVE EEKRKKEEEE KKAAEVASQQ KKLKEKEKKL  360
LRKERSRLRT LAAPVLSQHL LGLTDDDVEG VCMSLDIEQM RNLCDKLDGK GELVKAELLR  420
EALGQEHNSK YENKDENSKS QQNGSLEDKR QVSLMSSEKR EKPWSKEEVD LLRKGVLKYP  480
KGTSRRWEVI SEYIGTARTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST  540
RAEVEGVDNS SKPESGSAKL ANSQESPSQN TNSQKTEDAP AANGVSSSSD SDIWSAVQEK  600
ALVQALKTFP KETSQRWERV ATAVPGKTVN QCKKKFALLK ENFRNKKSAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-2018629613123Zuotin
5dje_B7e-2018629613123Zuotin
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538304.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016538305.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016538306.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2G2YYL60.0A0A2G2YYL6_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000085150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain