PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g08060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 294aa    MW: 33822.6 Da    PI: 6.7624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g08060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-2099149155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp +   ++r++lg+f taeeAa  +++a+ k++g
  CA08g08060  99 KKFRGVRQRP-WGKWAAEIRDPMK---KTRIWLGTFETAEEAAMVYDQAAIKIRG 149
                 59********.**********843...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.66E-3599156No hitNo description
PfamPF008474.2E-13100149IPR001471AP2/ERF domain
PROSITE profilePS5103223.38100157IPR001471AP2/ERF domain
SMARTSM003807.2E-40100165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-31100157IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22100156IPR016177DNA-binding domain
PRINTSPR003675.4E-11101112IPR001471AP2/ERF domain
PRINTSPR003675.4E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEGKISQKIK KCIVYKTVTS TTAEHDHNML SSTNNMPRVV RISYTDCDAT DSSSDEEEEN  60
RVKKYVTEIR FEKRVLKKSS SSSNKKKKMM DVKKDENVKK FRGVRQRPWG KWAAEIRDPM  120
KKTRIWLGTF ETAEEAAMVY DQAAIKIRGP DALTNFIKPP LKKDSMVSSV SGYDSTGESE  180
NLCSPTSVLR HNISNNNVGV ADAKSVKEQM DERKRLEIVM QNEIMLDDNL PLMDQCFLKD  240
FFDFRSPSPL MDDVLLPVFC DKMNLLPELS YDRKLDEDLE SCKWVNDFFE NYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2499165468ATERF1
3gcc_A3e-2499165468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755134e-36HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538170.10.0PREDICTED: ethylene-responsive transcription factor CRF6 isoform X1
SwissprotQ9SUE32e-47CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1U8E4D60.0A0A1U8E4D6_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YY410.0A0A2G2YY41_CAPAN; ethylene-responsive transcription factor CRF6 isoform X1
STRINGXP_009758972.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-35cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]