PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g08060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 33822.6 Da PI: 6.7624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 99 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp + ++r++lg+f taeeAa +++a+ k++g CA08g08060 99 KKFRGVRQRP-WGKWAAEIRDPMK---KTRIWLGTFETAEEAAMVYDQAAIKIRG 149 59********.**********843...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.66E-35 | 99 | 156 | No hit | No description |
Pfam | PF00847 | 4.2E-13 | 100 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.38 | 100 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-40 | 100 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 100 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 100 | 156 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-11 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEGKISQKIK KCIVYKTVTS TTAEHDHNML SSTNNMPRVV RISYTDCDAT DSSSDEEEEN 60 RVKKYVTEIR FEKRVLKKSS SSSNKKKKMM DVKKDENVKK FRGVRQRPWG KWAAEIRDPM 120 KKTRIWLGTF ETAEEAAMVY DQAAIKIRGP DALTNFIKPP LKKDSMVSSV SGYDSTGESE 180 NLCSPTSVLR HNISNNNVGV ADAKSVKEQM DERKRLEIVM QNEIMLDDNL PLMDQCFLKD 240 FFDFRSPSPL MDDVLLPVFC DKMNLLPELS YDRKLDEDLE SCKWVNDFFE NYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 99 | 165 | 4 | 68 | ATERF1 |
3gcc_A | 3e-24 | 99 | 165 | 4 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 4e-36 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538170.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF6 isoform X1 | ||||
Swissprot | Q9SUE3 | 2e-47 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A1U8E4D6 | 0.0 | A0A1U8E4D6_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YY41 | 0.0 | A0A2G2YY41_CAPAN; ethylene-responsive transcription factor CRF6 isoform X1 | ||||
STRING | XP_009758972.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-35 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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