PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g06790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 25506.1 Da PI: 8.7752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.8 | 6.1e-21 | 11 | 139 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +G+rFhPt e++ +yL +++++l+ ++ ++evd+y ePw++ + +++ y ++ +kk+a + r++r++ +g W+ + k kev+++kg+l CA08g06790 11 MGYRFHPTHTEVL-KYLLGFARNDPLPKQNKlMQEVDLYGDkEPWQIF-E-GDNTNTHYCIAQLKKKKADSIRTERSAGKGKWNPQCKAKEVFDHKGRL 106 7**********99.999999**9997776666******97549****5.2.2334567999999999999***************************** PP NAM 100 vglkktLvfy....kgrapkgektdWvmheyrl 128 +g k+L + ++++ k+ +W+m ey+l CA08g06790 107 MGYVKSLKYIprtaHKSSIKAAYGEWLMTEYSL 139 **********765445555667889******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-22 | 8 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.81 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-10 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSWYKQTCSI MGYRFHPTHT EVLKYLLGFA RNDPLPKQNK LMQEVDLYGD KEPWQIFEGD 60 NTNTHYCIAQ LKKKKADSIR TERSAGKGKW NPQCKAKEVF DHKGRLMGYV KSLKYIPRTA 120 HKSSIKAAYG EWLMTEYSLR YSQDIKKKDY VICKIKKKKE NDSDKQKRVA NDDENMSDIE 180 EYIDSVLKEE DLNHDLAVNS KHELALAGSI DLDAIDFVL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581802.1 | 1e-153 | PREDICTED: protein CUP-SHAPED COTYLEDON 1-like | ||||
TrEMBL | A0A2G2YXK3 | 1e-162 | A0A2G2YXK3_CAPAN; Uncharacterized protein | ||||
STRING | XP_009762991.1 | 2e-57 | (Nicotiana sylvestris) | ||||
STRING | XP_009598748.1 | 7e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 2e-09 | NAC-domain protein 101 |