PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA08g06170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1013aa MW: 111642 Da PI: 4.8877 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 1 | 39 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 de+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l CA08g06170 1 DEILCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 39 89*********************9.************986 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 69 | 108 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ede ++++vk++G++ W+tIa++++ gR +kqc++rw+++l CA08g06170 69 EDEVIAELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 108 9************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.4 | 9.3e-15 | 114 | 156 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ CA08g06170 114 KEAWTQEEEVTLIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 156 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.722 | 1 | 39 | IPR017930 | Myb domain |
Pfam | PF13921 | 2.6E-10 | 1 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.13E-11 | 1 | 51 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-4 | 1 | 41 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.11E-9 | 1 | 39 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 1 | 53 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.101 | 40 | 112 | IPR017930 | Myb domain |
CDD | cd00167 | 1.54E-12 | 47 | 108 | No hit | No description |
SMART | SM00717 | 2.0E-10 | 61 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.9E-14 | 69 | 122 | No hit | No description |
SuperFamily | SSF46689 | 3.91E-28 | 88 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.025 | 113 | 163 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-14 | 113 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-10 | 116 | 156 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 116 | 163 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1013 aa Download sequence Send to blast |
DEILCKAVQR FKGKNWKKIA ECFKDRTDVQ CLHRWQKVLN PELVKGPWSK EVNICFIIHG 60 YSGTLGILED EVIAELVKKY GPKKWSTIAQ HLPGRIGKQC RERWHNHLNP GINKEAWTQE 120 EEVTLIHAHQ IYGNKWAELT KFLPGRTDNA IKNHWNSSVK KKLDVYLASG ALAKFPTLPN 180 VNHQNQSIPS SIKLQQSSED DSVRKEGTEM EEVSECSQSS NLAGCSQSTS DMGNTFVYTR 240 EEGKLLEDSN YRKDPSASSA PCSEYYTPAF EDITFSVAEV PSELAESKLL EHNFSQNWAT 300 SMGKDWQFNP DDIPNISPLE LMQDSSGFFM QCLTGTGNHD MVTFPQQNEM KFETTNDGSM 360 VVGLHKPNEM FTSVEGCSMV YPEAGIPQCF PSEIGMNGVD ETAGSMIYQI SEGGNMSIEK 420 CNPLCSDVMG TSSCQPCSVP SQFSSEQSSH MFGIPSNQFH NPSHTARESQ TNNCDGFLYP 480 MESDTPCDNI MDDPLLKDQL DQTSDSVQLV SVNDFRSTPS NTIQTCPLVN ENSAVKEDQM 540 DGGALCYEPP RFPSLDVPFF SCDLIQSGTD THQEYSPLGI RQLMMTSVNC LTPFKLWDSP 600 TRDGSPDAVL RSAAKTFTST PSILKKRHRD LVSPLSEKRC GKKLESDLRQ ESFSNLTKDF 660 SRLDVMFDDS ANEKAMPSLT KDQTLELQAS EDKENINPTE DGQKEEDKGR DGHSSCGTSG 720 RQLDGGEVHY KDQGTRESKR LGSKDAVGKI KQPSGVLVEL NASGLFFSPD RFGAKSDRGT 780 NLSNKALGNQ YSRRLEAASN QGSVSSSFET SSFSVICSPR IHGKKDGSSF VITTSMQSAP 840 TSTALESSAE TSGNGAGAGI IASISGETPY KRSIESPSAW KSPWFLNSFL SSPRLDNELT 900 FEDLALFMSP GDRSYDAIGL MKQLSEQTAG AFADAQEVLG GDTPESILRG RNSKNQNADE 960 NRSLLSANAM SERRTLDFSE CGSPEKEKET EKCSTNNNSF SSPSSYLLKG CR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-61 | 1 | 163 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-61 | 1 | 163 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB056123 | 0.0 | AB056123.1 Nicotiana tabacum NtmybA2 mRNA for Myb, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016537976.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_016537977.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1U8DUZ0 | 0.0 | A0A1U8DUZ0_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YXH8 | 0.0 | A0A2G2YXH8_CAPAN; myb-related protein 3R-1-like | ||||
STRING | Solyc08g068320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-166 | Homeodomain-like protein |