PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g04040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 429aa    MW: 47614.1 Da    PI: 6.9559
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g04040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.51.2e-38602142136
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eaessss 80 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ +                 ++++  ++   e ++  +
  CA08g04040  60 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeafpdtlqlsdekrssvGTEPDFDSadvEMDDYPN 158
                 689*************************************************************88888887777666666333332222222222222 PP

         TCP  81 sasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                  + +++++++ +++++ ++s++s+   l++++ +sr kar+ra+er +ek + k+++
  CA08g04040 159 YK-QQQQQQQGQQKPCCSNSETSKGPGLSFSRsDSRLKARERAKERATEKEKEKENK 214
                 22.2333355566668888888888899**999************999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-4061210IPR005333Transcription factor, TCP
PROSITE profilePS5136931.16762120IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.142190209IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEMEEIRTEE CKFPRIRNKE DEQYQYEVDD AGEDKKRGLG AIAKFYGRPS SRIVRVSRAS  60
GGKDRHSKVL TSKGLRDRRV RLSVNTAIQF YDLQDRLGCD QPSKAVEWLL KAAAPSIAEL  120
PPLEAFPDTL QLSDEKRSSV GTEPDFDSAD VEMDDYPNYK QQQQQQQGQQ KPCCSNSETS  180
KGPGLSFSRS DSRLKARERA KERATEKEKE KENKSSVVAH HQNMHPSSSF TELLTGGMSD  240
NNNNNSNTSP NASIHQNMPR QWSTNPLEYF TSGLLGPSST RGIDNTSGFS DQIYIGNPLQ  300
SLRVVPSPMF SITGDHRPEL QHFPFGGDNL VPSVTTSGGS NCNGHRSNTS NEYNLNFSIS  360
SSASGFNRGT LQSNSSSSQS TMPHFQRFSP INGSQNLFHG TTTEYDAGLH LFYGNGYGHS  420
DQKEKEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2167121155Putative transcription factor PCF6
5zkt_B5e-2167121155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963411e-134GQ496341.1 Solanum lycopersicum TCP transcription factor 24 (TCP24) mRNA, complete cds.
GenBankHG9755201e-134HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557415.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016557416.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016557417.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016557418.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1U8FDN70.0A0A1U8FDN7_CAPAN; Uncharacterized protein
TrEMBLA0A1U8FDV00.0A0A1U8FDV0_CAPAN; transcription factor TCP2-like
STRINGSolyc08g048390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2