PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g04030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 417aa    MW: 46230.6 Da    PI: 6.6748
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g04030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.81.9e-38592092136
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.....eaessss 80 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG  ++sk +eWLl++a p+i el+ +               s      +      ++++++
  CA08g04030  59 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCEQPSKVVEWLLKEAAPSISELPPLeafpdtlqlsdekrsS------VgtepgFDSAQVE 151
                 689*************************************************************7777766664433330......1222232333333 PP

         TCP  81 sasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                 +++ ++ + ++++++++ ++s++s+ s l l++ +sr kar+rarer +ek + k+++
  CA08g04030 152 MDDDPNYNqQQQQEKPCCSNSETSKGSRLTLSRsNSRLKARERARERATEKEKEKENK 209
                 333444443555555599999999999******9************999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-3960205IPR005333Transcription factor, TCP
PROSITE profilePS5136929.79661119IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.288185204IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEEIQTEECK FPRISNKEDK QYQYDVDDAG EVNKCTDLGG IGKLYGWPSS RIVRESRASG  60
GKDRHSKVLT SKGLRDRRVR LSVNTAIQFY DLQDRLGCEQ PSKVVEWLLK EAAPSISELP  120
PLEAFPDTLQ LSDEKRSSVG TEPGFDSAQV EMDDDPNYNQ QQQQEKPCCS NSETSKGSRL  180
TLSRSNSRLK ARERARERAT EKEKEKENKS SVVAHHQNMH PISSFTELLT GCMNDNNSDN  240
KSNTSPNGSI HQNTPRQWCT NPLEQFTSGL LGSSTTRGID NSTGFSGQIY FENPQQPLLA  300
VSSSMFSISR DHQPELQHFP FGSDNLVPAV TSSQSNTSNK YNLNFSLSSS ASGFNRGTLQ  360
SNSSSSPSTL PHFQRLSPTD GSQSLFHGTT TEYDARLQLF YGNGYGHSDQ KGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2066120155Putative transcription factor PCF6
5zkt_B7e-2066120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557428.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016557429.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1U8FM730.0A0A1U8FM73_CAPAN; transcription factor TCP2-like
TrEMBLA0A1U8FNU10.0A0A1U8FNU1_CAPAN; Uncharacterized protein
STRINGXP_009779111.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2