PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g03640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 145aa MW: 16316.7 Da PI: 9.4735 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 32.7 | 2e-10 | 86 | 116 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 rfh l+efD++k+s r++L +hne +rk++ CA08g03640 86 LRFHLLDEFDDGKQSYRKHLVGHNEHQRKPH 116 59***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 9.571 | 21 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.44E-8 | 87 | 119 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MRGVGNIFGS LVGVFSGEDK SSSISRDSSL IDLKPGRFPD HISANIFKYP KIMPSFTTTE 60 FIFPAKRIQQ ALLVSSKEEF SLDTLLRFHL LDEFDDGKQS YRKHLVGHNE HQRKPHTSMH 120 SGYKLFLSFA INVVLNFAYC SSTL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545418.1 | 1e-41 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_016545419.1 | 1e-41 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2G3AMV4 | 1e-101 | A0A2G3AMV4_CAPAN; Uncharacterized protein | ||||
STRING | Solyc03g114850.2.1 | 3e-26 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-09 | SBP family protein |