PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g02890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 28159 Da PI: 9.1184 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.4 | 1.2e-38 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+Ca+dC+lapyfpa+++k+f n+hklFG+sn+lk+lk++++ ++++am++l++eA++ra dPv G++++il+l++q++ +ael+ + + CA08g02890 44 ACAACKYQRRRCAPDCPLAPYFPAKRHKDFLNAHKLFGVSNILKVLKNVSPFQKDNAMKALIFEANIRAGDPVGGCYRTILNLHRQINLCQAELQFVYR 142 7********************************************************************************************998766 PP DUF260 100 e 100 + CA08g02890 143 Q 143 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.434 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 44 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTNVVNNNTQ NISYLRSSLT TRSSTAAARV ASQGGGSGGN GSQACAACKY QRRRCAPDCP 60 LAPYFPAKRH KDFLNAHKLF GVSNILKVLK NVSPFQKDNA MKALIFEANI RAGDPVGGCY 120 RTILNLHRQI NLCQAELQFV YRQIFRVKAA AIQVQPNINT KACSLNEINN SILGFDFSPI 180 PCLHEFDIST SIGEGSNSQI VEGERLEGFN NEKFEAKTVM SICNDKQSIV EHGDFKPYFG 240 NFHDYKGKGI ATELR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 45 | 146 | 12 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 45 | 146 | 12 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582127.1 | 0.0 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 1e-39 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A1U8HFD1 | 0.0 | A0A1U8HFD1_CAPAN; LOB domain-containing protein 22-like | ||||
STRING | XP_009607074.1 | 3e-98 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14294 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-37 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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