PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g01310

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 301aa MW: 33440.9 Da PI: 7.1418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g01310	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H CA08g01310 110 FSCNFCKREFSTSQALGGHQNAH 132 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.59E-6	107	137	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.6E-4	107	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.198	110	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDVFAMKKSC SSEASSTSAT SEDSHEIITN AKKMKEKVVE VEECQLKPHV LSSSDVLLDI 60 EVHNDYKNKK NVSCLNHELN LFNSTQAGAS HESSNEATPK QNRSSDGRTF SCNFCKREFS 120 TSQALGGHQN AHKQERVLAK RRNKLDDMVS LFGPTNYHPY YNPYSSFNSH VPFHGSFATR 180 SLLGIQGDSS AIHKPSSYET WPFSSSYNFR SDPQKWSSSS SSSLFKTENI IGNNIHGASL 240 ENSLFTSKNN TKGFNLMDSS VNVNDNLGGK NYLKIGLGEE KAKKDNEEEE ESKLDLNLKL 300 *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016581617.1	0.0	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A2G2YW32	0.0	A0A2G2YW32_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400058625	1e-132	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-24	C2H2 family protein