PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g00650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 268aa MW: 27642.5 Da PI: 8.5063

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g00650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.5	4.8e-38	26	113	2	90
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 +++k + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ s s +s++ss +a CA08g00650 26 TVRKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPANFStV--SVSLRSSHNSSVSA 113 679******************************************************************88842..32222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.675	32	86	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.4E-35	32	117	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSTSLDQNGT AGAGTSNNDS STTTLTVRKP PAKDRHSKVD GRGRRIRMPI VCAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TIPANFSTVS VSLRSSHNSS VSASVDNNKS 120 FVHPLICGPP SPVSSPAPFL LGKRLRAEEE EGGGGGGGEK DGDNVNVNNV VGYTASFWSV 180 PVPVRHDYGQ FWSFGAGAAA SGAMPSRFFQ QQMEEAASVS GGGSDGGGRI GNYFPIAQGH 240 LNLLATLSGS GSGSGPCSSG RRVDDGH*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	5e-69	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016537372.1	0.0	PREDICTED: transcription factor TCP21-like isoform X1
Swissprot	Q9FMX2	6e-66	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U8DQT7	0.0	A0A1U8DQT7_CAPAN; Transcription factor TCP7
TrEMBL	A0A2G2YVR6	0.0	A0A2G2YVR6_CAPAN; transcription factor TCP21-like isoform X1
STRING	Solyc01g008230.2.1	3e-97	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-48	TCP family protein