PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g21550
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 449aa    MW: 50659.3 Da    PI: 7.9034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g21550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.68.1e-130624482374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.......sseelaalkl.......f 84 
                 ++lL++cAe +s +d+++a++lL+ ls ++sp gd+++Rl++ ft+AL+ rl+r  +s++ + + +p ++  ++       ss++l++l l       +
  CA07g21550  62 RQLLISCAELISRSDFSAANRLLNILSANSSPFGDSTERLVHQFTRALSLRLNRyITSSTTNHFlTPVTSIIETapadsssSSSSLSSLALlqssylsL 160
                 89****************************************************74444444332444433333343333333333333334556678* PP

        GRAS  85 sevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                 ++v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+rLakfA++lg++f+f++l 
  CA07g21550 161 NQVTPFIRFTQLTANQAILEAINGNqQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFHPLy 254
                 ************************98999**********************9.899**********....****************************7 PP

        GRAS 182 .vakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                  +++r +d +++ +    + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+eal+yy+a+fdslea+lp
  CA07g21550 255 iASNRDHDEDPSIIssiVLLPDETLAINCVFYLHRLLKDREKLRV----FLHRVKSMNPKIVTIAEREANHNHPLFLQRFVEALDYYTAVFDSLEATLP 349
                 544466666665551116677****************88888888....************************************************** PP

        GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + s+er++vE++++grei ++va eg++r+erhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++   s+s++lgW+++pL+s+S+Wr
  CA07g21550 350 PGSRERMTVEQVWFGREILDIVAIEGEKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLRVLSNSFLLGWQNQPLFSISSWR 448
                 **************************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.16435427IPR005202Transcription factor GRAS
PfamPF035142.8E-12762448IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLGSFGSSSS QSHSHPHHHD EQESTDHHHD DHQRRRFIAT AAATTTATTT ITATISPVIQ  60
IRQLLISCAE LISRSDFSAA NRLLNILSAN SSPFGDSTER LVHQFTRALS LRLNRYITSS  120
TTNHFLTPVT SIIETAPADS SSSSSSLSSL ALLQSSYLSL NQVTPFIRFT QLTANQAILE  180
AINGNQQAIH IVDFDINHGV QWPPLMQALA DRYPAPTLRI TGTGNDLDTL RRTGDRLAKF  240
AHSLGLRFQF HPLYIASNRD HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRVF  300
LHRVKSMNPK IVTIAEREAN HNHPLFLQRF VEALDYYTAV FDSLEATLPP GSRERMTVEQ  360
VWFGREILDI VAIEGEKRKE RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS  420
EGYQLRVLSN SFLLGWQNQP LFSISSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-616844725377Protein SCARECROW
5b3h_D7e-616844725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1875390.0AC187539.1 Solanum lycopersicum cv. Heinz 1706, chromosome 7 BAC clone C07HBa0179K09, complete sequence.
GenBankAF0986740.0AF098674.1 Lycopersicon esculentum lateral suppressor protein (Ls) mRNA, complete cds.
GenBankAJ3033450.0AJ303345.1 Lycopersicon esculentum lateral suppressor gene, ORF1 and ORF2.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579584.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1U8HGI40.0A0A1U8HGI4_CAPAN; Scarecrow-like protein 18
TrEMBLA0A2G2Z6B90.0A0A2G2Z6B9_CAPAN; scarecrow-like protein 18
STRINGPGSC0003DMT4000572650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-129GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]