PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g21470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 38287.7 Da PI: 8.5699 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.1e-51 | 14 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhP+deel+++yL kk+++++ + ++ + evd++k+ePw++p+ + + kewyf+s+rd+kyatg r+nrat sgyWkatgkd++v++ kg CA07g21470 14 LPPGFRFHPRDEELICDYLMKKIDQSPDQQQQYpfLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAVVR-KG 111 79************************96665533499*************7666789**************************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +lvg++ktLvfy+grapkg+k+dWvmhe+rle CA07g21470 112 SLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 143 9****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-60 | 3 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.596 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-26 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSSNSSLSVV ESKLPPGFRF HPRDEELICD YLMKKIDQSP DQQQQYPFLI EVDLNKSEPW 60 EIPEVACVGG KEWYFYSQRD RKYATGLRTN RATVSGYWKA TGKDRAVVRK GSLVGMRKTL 120 VFYQGRAPKG RKSDWVMHEF RLEGPLNNNI RPQISSPRED WVLCRVFHKN KELLAAKQGT 180 SSNNIYYDDG TISSSSLPQL MENPYITFDQ TQPNNNNINM NELYYEQVPC FSIFTPNQTT 240 FTSHSHHHHH XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXX* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-51 | 10 | 172 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY308828 | 1e-158 | AY308828.1 Capsicum annuum salicylic acid-induced protein 19 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579583.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 3e-97 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1U8HEJ9 | 0.0 | A0A1U8HEJ9_CAPAN; NAC domain-containing protein 21/22-like | ||||
STRING | PGSC0003DMT400056916 | 1e-148 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-95 | NAC domain containing protein 1 |