PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g21320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 331aa    MW: 37941.6 Da    PI: 7.5419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g21320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-50321592128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPtdeelv +yL++kve++++++ e ik++diyk+ePwdLpk+ + +ekewy+++kr +ky+++ r+nr+t sg+Wkatg d++++s+   +e
  CA07g21320  32 LPGFRFHPTDEELVGFYLRRKVEKRPINI-ELIKQIDIYKYEPWDLPKSSNMGEKEWYYYCKRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSStaCHE 129
                 59***************************.89***************9888999***************************************877777 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  CA07g21320 130 CIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 159
                 8***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.37531197IPR003441NAC domain
SuperFamilySSF1019417.45E-5332196IPR003441NAC domain
PfamPF023656.9E-2433159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEVENNLSNN KVTSKCYTRE EDDHEEVEDM ALPGFRFHPT DEELVGFYLR RKVEKRPINI  60
ELIKQIDIYK YEPWDLPKSS NMGEKEWYYY CKRGRKYRNS IRPNRVTGSG FWKATGIDRP  120
IYSSTACHEC IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP AENDKSTKHI QAKSIAQEAV  180
SILIHREVWT LCRIFKGNGS DKKCLPAEWR GSAAAKRSPV VDTSSQTCST DSSSDNYVIS  240
FAAPAAIVMH NNNSTITHET KPFISGHVHD QDISNNNYCN QQLIMGQLMS SSSVYTHQTP  300
SSSFGQDMNE WLKNGDYWDE LRSILELDRF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-473320322174NAC domain-containing protein 19
3swm_B4e-473320322174NAC domain-containing protein 19
3swm_C4e-473320322174NAC domain-containing protein 19
3swm_D4e-473320322174NAC domain-containing protein 19
3swp_A4e-473320322174NAC domain-containing protein 19
3swp_B4e-473320322174NAC domain-containing protein 19
3swp_C4e-473320322174NAC domain-containing protein 19
3swp_D4e-473320322174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579580.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK554e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2G3C3D00.0A0A2G3C3D0_CAPCH; Transcription factor JUNGBRUNNEN 1
STRINGXP_009778771.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-86NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]