PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g21180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33787.8 Da PI: 6.7316 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.3e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W eEd +l+ ++++G +W++ ++ g+ R++k+c++rw +yl CA07g21180 17 KGPWNSEEDIRLIAFIQKHGHQNWRSLPKQAGLLRCGKSCRLRWINYL 64 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l CA07g21180 70 RGNFTPQEEETIIKLHQSFGNK-WSRIASHLP-GRTDNEIKNVWNTHL 115 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 8 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.309 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-8 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.435 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.34E-10 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MMGKGRAPCC DKSKVKKGPW NSEEDIRLIA FIQKHGHQNW RSLPKQAGLL RCGKSCRLRW 60 INYLRPDVKR GNFTPQEEET IIKLHQSFGN KWSRIASHLP GRTDNEIKNV WNTHLKKRLM 120 KRLHGDKAKL DGTCANSQSS SSSTSVVSHT DDTSNEGKFK NVDANMIITK EEEEATKSCS 180 PTSSYASNLS NLSQVHEASS PNNVDMDWIF QFSEEPFPSS TARKVHDDDD EGIIEIPLEC 240 DVDFWDMLDI MGPSPSPPPP PPPNSESKLD HHSEASCQGL SEFERQKWFT YFERELGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-26 | 17 | 119 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-26 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-26 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579575.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A2G2Z6A0 | 0.0 | A0A2G2Z6A0_CAPAN; Myb-related protein | ||||
STRING | XP_009612238.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 6e-79 | myb domain protein 58 |