PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g20170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 548aa    MW: 61072.9 Da    PI: 5.4493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g20170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.11.5e-1371775471374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e+L++cA+a+++++l  a++l+++l++ +s  g+pmqRl ay++e+L arla+s+s++ykal+++e +   s+e +++++l++e++P++kf++l aN
  CA07g20170 177 LKEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPMQRLGAYMLEGLVARLASSGSSIYKALRCKEPT---SVELFSYMHLLYEICPYFKFGYLSAN 272
                 5789*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI++a+++e+ +HiiDf++ qG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL+++A++++vpfef++ va +++d+e+++L+v
  CA07g20170 273 GAIVDAMKSENSIHIIDFQVAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSVAASCNVPFEFHP-VAASCSDVEIKHLNV 370
                 **************************************************998899999************************.799************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpr+++eri+vE+++l+reiv
  CA07g20170 371 RPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPRFLETLNYYLSVFESIDVALPRDHKERINVEQHCLAREIV 469
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acegaer+erhe le+Wr+r+++aGF+p+pls+++++++k+ll+++++  y+++e++g l+lgW++r Lv+ +aW+
  CA07g20170 470 NILACEGAERVERHELLERWRSRFSMAGFEPYPLSSSVNATIKTLLENYYQS-YTLDERNGVLYLGWMNRDLVASCAWK 547
                 **************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.015151528IPR005202Transcription factor GRAS
PfamPF035145.1E-135177547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MRPSQNAEDI KEFNRFFNQP IEYQDSFFLP SVNNPNNNQS FYADRGQQTQ VSALKPDQHC  60
YVESSTGNSS ELVSDSPPID AFFADGTPMM HQGSDSCRSD MHHSPDETHH SSGNSSCFTS  120
DVTDLKHKLR EIETAMLGPD SESLESYNTT PVAAANQISS ESDKLVGVME MMPRGDLKEV  180
LIACAKAIAE NNLITAEWLM SELRTVVSVC GSPMQRLGAY MLEGLVARLA SSGSSIYKAL  240
RCKEPTSVEL FSYMHLLYEI CPYFKFGYLS ANGAIVDAMK SENSIHIIDF QVAQGSQWIT  300
LIHALAARPG GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSVAASCNVP FEFHPVAASC  360
SDVEIKHLNV RPGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES  420
NTNTVQFFPR FLETLNYYLS VFESIDVALP RDHKERINVE QHCLAREIVN ILACEGAERV  480
ERHELLERWR SRFSMAGFEP YPLSSSVNAT IKTLLENYYQ SYTLDERNGV LYLGWMNRDL  540
VASCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6818454626378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581393.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U8HJK10.0A0A1U8HJK1_CAPAN; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2G2Z5R20.0A0A2G2Z5R2_CAPAN; scarecrow-like transcription factor PAT1
TrEMBLA0A2G3C2K70.0A0A2G3C2K7_CAPCH; Chitin-inducible gibberellin-responsive protein 2
STRINGXP_009804325.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]