PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g18620

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 431aa MW: 46805.4 Da PI: 9.3996

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g18620	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	197	219	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L+ H + H CA07g18620 197 TCHKCGEQFGKWEALEEHHLSkH 219 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	198	219	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.73E-21	221	429	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.4E-9	232	426	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MGEKKNMPTV WFSLKKTLHC KSDQSDVHDP KTRKQLSAIL TKKGGGGRSG CSRSIANLKD 60 VIHGSKRHLD KPPSCSPRSI GSSEFLNPIT HEVILSNSRC ELKITSFNGF QESANGGGXG 120 GITNGGSTFV GTLRPGTPGP GGHPTMHYFN SGCRNTVATP TRRSASFLVD KEGHGSFPCK 180 PTRHSLDNDV NGTSGVTCHK CGEQFGKWEA LEEHHLSKHA VSELLEGDSS RKIVEIICRS 240 SWLKSESQVG RIERVLKVHN TQKTLARFEE YREMVKSKAS KLPKKHPRCI ADGNELLRFY 300 GTTLACGLGM NGSCSLCISD KCCVCRIIRN GFSTKKELKG GIGVFTTSTS GSAYECIEMS 360 KEDPSLRKAL IVCRVVAGRV HRPLENIQEM AGQTGFDSLA GKVGVYSNIE ELYLLNPKAL 420 LPCFVVICKA *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MGEKKNMPTV WFSLKKTLHC KSDQSDVHDP KTRKQLSAIL TKKGGGGRSG CSRSIANLKD  60
VIHGSKRHLD KPPSCSPRSI GSSEFLNPIT HEVILSNSRC ELKITSFNGF QESANGGGXG  120
GITNGGSTFV GTLRPGTPGP GGHPTMHYFN SGCRNTVATP TRRSASFLVD KEGHGSFPCK  180
PTRHSLDNDV NGTSGVTCHK CGEQFGKWEA LEEHHLSKHA VSELLEGDSS RKIVEIICRS  240
SWLKSESQVG RIERVLKVHN TQKTLARFEE YREMVKSKAS KLPKKHPRCI ADGNELLRFY  300
GTTLACGLGM NGSCSLCISD KCCVCRIIRN GFSTKKELKG GIGVFTTSTS GSAYECIEMS  360
KEDPSLRKAL IVCRVVAGRV HRPLENIQEM AGQTGFDSLA GKVGVYSNIE ELYLLNPKAL  420
LPCFVVICKA *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU560900	0.0	EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312046.1	0.0	uncharacterized LOC107878739
TrEMBL	A0A2G2Z5C7	0.0	A0A2G2Z5C7_CAPAN; Uncharacterized protein
STRING	XP_009593520.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-171	C2H2 family protein