PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g18600
Common NameSCL1
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 583aa    MW: 64570.1 Da    PI: 6.791
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g18600genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.43.8e-1292125811373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+++++l+  ++l+a+ ++ +s +gdp++Rl ay++e+L ar  +s++++y+al+++e +     + l+++++++e++P+lkf++++aN
  CA07g18600 212 LKQLLIACARALAENNLNDFEQLIAKARNAVSITGDPIERLGAYIVEGLVARKDGSGTNIYRALRCKEPA---GRDLLSYMHILYEICPYLKFGYMAAN 307
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l ++g+rLa + +++++p+ef++ v    ++++ ++L+v
  CA07g18600 308 GAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLTAVGKRLAAISAKFNIPIEFHA-VPVFASEVTRDMLDV 405
                 ***************************************************999999**************************.688999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ l+lh+++desv+++++rde+L++vk  sPkvv++veqe+++n+++F+ rfleal+yysa+f+s++++l r+ +eri+vE+++l+r+iv
  CA07g18600 406 RPGEALAVNFPLALHHTPDESVDVTNPRDELLRMVKFFSPKVVTLVEQESNTNTAPFFPRFLEALDYYSAMFESIDVTLERDRKERINVEQHCLARDIV 504
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg+er+erhe l+kW+ rl++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  CA07g18600 505 NVIACEGKERVERHELLGKWKLRLTMAGFHQYPLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKERNLISASAW 581
                 **********************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.367186563IPR005202Transcription factor GRAS
PfamPF035141.3E-126212581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESHHLYGYG VTGANLSYAY SKTTTPSIPN RLLGTLKFDS GYSPNSPFVN YFDPGTPTTL  60
SDSLEQHSST ENISGTSCSS NSSLDYSHYF RRPSPSPDFR QNSLLVCSGE TSLLQYANHS  120
HNVKHALLQL ETALMGPEEA TTSSPSAGEI QQPQTSGQSS GMWSQDGQVL RRIGSQPSPV  180
PIFGISGNRI QSEKRHKAME DFPVQGIPSG NLKQLLIACA RALAENNLND FEQLIAKARN  240
AVSITGDPIE RLGAYIVEGL VARKDGSGTN IYRALRCKEP AGRDLLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRNEDRI HIIDFQIAQG TQWMTLLQAL AARPSGAPYV RITGIDDPVS  360
KYARGDGLTA VGKRLAAISA KFNIPIEFHA VPVFASEVTR DMLDVRPGEA LAVNFPLALH  420
HTPDESVDVT NPRDELLRMV KFFSPKVVTL VEQESNTNTA PFFPRFLEAL DYYSAMFESI  480
DVTLERDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKLRLTM AGFHQYPLSS  540
YVNSVIKSLL RCYSEHYTLV EKDGAMLLGW KERNLISASA WH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-622095821375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8780270.0EU878027.1 Capsicum annuum scarecrow-like protein (SCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581328.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8HJE10.0A0A1U8HJE1_CAPAN; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2G2Z5F90.0A0A2G2Z5F9_CAPAN; scarecrow-like protein 21
STRINGSolyc07g063940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-179GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]