PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g18030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35650.6 Da PI: 4.6923 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.6 | 1e-18 | 16 | 64 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp + CA07g18030 16 LPPGFRFHPTDEELVVHYLKKKIASVPLPV-SIIAEVDLYKFDPWELPVR 64 79****************************.89**************942 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-21 | 9 | 69 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.2 | 16 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-9 | 17 | 71 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MESTDSSSGS HQQPQLPPGF RFHPTDEELV VHYLKKKIAS VPLPVSIIAE VDLYKFDPWE 60 LPVRFLLFFC PIFFSVQLNG KSEFLFQIFI CYFDFYSSTC VCEIFFFLNI IGVSSILVIF 120 LLIFVFLLVL FYFLNMQLDD WVLCRIYKKS NTQRPIDHER DDLNIDMMMG SSSSINPSCI 180 ANNSMSLPNL FGQPKIPQLK SSNFGSALLE NDPNLYDQSG SQFSSKRPLG NLYWNDQDGA 240 GSNDNSHQST KRFLTDNMED GLNMNVRADE QNGSIVSLLS QLPQTPSLHQ QQVLGSLSDG 300 VFRQPYSGMN WYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-22 | 16 | 151 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC143039 | 1e-122 | KC143039.1 Solanum lycopersicum sinor-like protein 1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581260.1 | 1e-168 | PREDICTED: NAC transcription factor 56-like | ||||
TrEMBL | A0A1U8HCZ3 | 1e-166 | A0A1U8HCZ3_CAPAN; NAC transcription factor 56-like | ||||
STRING | PGSC0003DMT400049664 | 1e-139 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 4e-27 | NAC domain containing protein 25 |