PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g18020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 457aa MW: 52911 Da PI: 9.1342 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.7 | 1.6e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeel+veyL++kv+g+ +el ++i+evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk v s +g+ CA07g18020 14 LPPGFRFYPTDEELLVEYLCRKVAGHIFEL-QIIAEVDLYKFDPWVLPNKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVVAS-EGRR 110 79**************************99.89***************8777899***********************************9999.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkg+kt+W+mheyrl CA07g18020 111 VGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-62 | 9 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.666 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MGLQEPDPLK QLNLPPGFRF YPTDEELLVE YLCRKVAGHI FELQIIAEVD LYKFDPWVLP 60 NKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVVASEGRR VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLC EPSRKIGSPR VRCVCLDDWV LCRIYKKNVA APKPGSCDLR 180 NKDISHGGSS SSSSSLFGDM LEALPVIEDR YFSLPQMNFQ QSDTNLSLQQ FGSGNFDWAA 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-101 | 1 | 173 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-101 | 1 | 173 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-101 | 1 | 173 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-101 | 1 | 173 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-101 | 1 | 173 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-101 | 1 | 173 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581259.1 | 1e-163 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-128 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A2G3C362 | 1e-163 | A0A2G3C362_CAPCH; NAC domain-containing protein 72 | ||||
STRING | PGSC0003DMT400049665 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-106 | NAC family protein |
Publications ? help Back to Top | |||
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