PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g16560

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

STAT

Protein Properties

Length: 955aa MW: 108051 Da PI: 6.5866

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g16560	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	179.2	6.1e-56	467	586	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 ldv+l++ +++pv+ + ev+asL+y+d+ ++vek+ da+apLL+sydG+e++s+drp +++ GrasfklkisqLsskcdnrLfri+feipk+ kypf+e CA07g16560 467 LDVTLMDNFSRPVTEEAEVIASLVYSDNETPVEKPVDADAPLLTSYDGIEYASSDRPNRIISGRASFKLKISQLSSKCDNRLFRIRFEIPKMGKYPFFE 565 89*********************************************************************************************** PP STAT 100 avskpirCisrsrntrssslt 120 ++s+pirCisr r+tr++sl+ CA07g16560 566 VLSRPIRCISRIRSTRATSLM 586 **************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.170.150.20	2.2E-53	37	154	IPR002579	Peptide methionine sulphoxide reductase MrsB
SuperFamily	SSF51316	4.76E-53	39	155	IPR011057	Mss4-like
TIGRFAMs	TIGR00357	1.1E-50	40	155	IPR002579	Peptide methionine sulphoxide reductase MrsB
Pfam	PF01641	5.5E-48	43	154	IPR002579	Peptide methionine sulphoxide reductase MrsB
SuperFamily	SSF49899	3.29E-7	228	297	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:2.60.120.200	6.7E-5	247	412	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF49899	3.29E-7	330	390	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF55550	1.32E-8	851	918	IPR000980	SH2 domain
Gene3D	G3DSA:3.30.505.10	7.1E-7	851	916	IPR000980	SH2 domain
PROSITE profile	PS50001	10.345	855	937	IPR000980	SH2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0033743	Molecular Function	peptide-methionine (R)-S-oxide reductase activity

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MDVAEIVKAW SSRRYESSYH EIKNDHHCAG SSQIDYSSIS DEEWKKQLTN EQFYITRQKG 60 TERAFTGEYW NTKTPGTYHC ICCDTPLFES STKFDSGTGW PSYYQPIGNN VKSKMDLSII 120 FMPRQEVLCA GCDAHLGHVF DDGPPPTGKR YCINRKVKSG SMGVQDYSSL RDVHVEFKDF 180 EVTNRFSLCF WFYLNDTSAL PSTILHQWQR LKIGSLGILC WCVVLVFAFF LKKSGVQDYS 240 SLKDVLVEFK DFEVTNRFSL CFWFYLNDAS TLPSIILHQV RNWQSCNVFL QANVNCSYSL 300 EHPDVTSHAP FLLLDEKKKI LLFPSLISNC SNVTSWREVA HATSECAFPT KKWVHVGCEV 360 TQDLLHLYFD GKIVGEKSLA SSLTNDTGPV NSRISLTCIS GKDSQLDGYV HNPELFPVVS 420 TIKNHYVKDP PVQLSIDNSS AYEIEEDSDG VWSIVGGKAS CRRNFSLDVT LMDNFSRPVT 480 EEAEVIASLV YSDNETPVEK PVDADAPLLT SYDGIEYASS DRPNRIISGR ASFKLKISQL 540 SSKCDNRLFR IRFEIPKMGK YPFFEVLSRP IRCISRIRST RATSLMLRKS SLGIHLLNGS 600 QSPVLEDGSS DLPCIVHEAK LSPSSKRVKL GQEKLCANFK DVQQPNGGSR SHSWTSEDNY 660 AYQNSLVARP VSQDGAENFS SDSEDSEATN SAIDDLPNDS GPISDLVVFK YCLADLNERR 720 LLLKEMTMTA KEELATFAER VSLFSGCSHH RFQISISKRL IEEGIKCWNL ISNNHHHVLW 780 ENLVSGLQEH FLKMTFGRTR SLTLQDFNLL RRVSGCQDLV SQDNFEKLWC WLYPVAFTVS 840 QKCISSLWGS TSPMWIEGFI TKEEAESSLR NLVALQEPGT FILRFPTSRS WPHPDAGNLV 900 ITYVGNDYTI HHRLLSHEFI YSSGAKGTAI KSMQDMLLEQ PELRRLGRQD FLLS*

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MDVAEIVKAW SSRRYESSYH EIKNDHHCAG SSQIDYSSIS DEEWKKQLTN EQFYITRQKG  60
TERAFTGEYW NTKTPGTYHC ICCDTPLFES STKFDSGTGW PSYYQPIGNN VKSKMDLSII  120
FMPRQEVLCA GCDAHLGHVF DDGPPPTGKR YCINRKVKSG SMGVQDYSSL RDVHVEFKDF  180
EVTNRFSLCF WFYLNDTSAL PSTILHQWQR LKIGSLGILC WCVVLVFAFF LKKSGVQDYS  240
SLKDVLVEFK DFEVTNRFSL CFWFYLNDAS TLPSIILHQV RNWQSCNVFL QANVNCSYSL  300
EHPDVTSHAP FLLLDEKKKI LLFPSLISNC SNVTSWREVA HATSECAFPT KKWVHVGCEV  360
TQDLLHLYFD GKIVGEKSLA SSLTNDTGPV NSRISLTCIS GKDSQLDGYV HNPELFPVVS  420
TIKNHYVKDP PVQLSIDNSS AYEIEEDSDG VWSIVGGKAS CRRNFSLDVT LMDNFSRPVT  480
EEAEVIASLV YSDNETPVEK PVDADAPLLT SYDGIEYASS DRPNRIISGR ASFKLKISQL  540
SSKCDNRLFR IRFEIPKMGK YPFFEVLSRP IRCISRIRST RATSLMLRKS SLGIHLLNGS  600
QSPVLEDGSS DLPCIVHEAK LSPSSKRVKL GQEKLCANFK DVQQPNGGSR SHSWTSEDNY  660
AYQNSLVARP VSQDGAENFS SDSEDSEATN SAIDDLPNDS GPISDLVVFK YCLADLNERR  720
LLLKEMTMTA KEELATFAER VSLFSGCSHH RFQISISKRL IEEGIKCWNL ISNNHHHVLW  780
ENLVSGLQEH FLKMTFGRTR SLTLQDFNLL RRVSGCQDLV SQDNFEKLWC WLYPVAFTVS  840
QKCISSLWGS TSPMWIEGFI TKEEAESSLR NLVALQEPGT FILRFPTSRS WPHPDAGNLV  900
ITYVGNDYTI HHRLLSHEFI YSSGAKGTAI KSMQDMLLEQ PELRRLGRQD FLLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2k8d_A	8e-41	39	154	23	138	Peptide methionine sulfoxide reductase msrB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144174	0.0	EF144174.1 Capsicum annuum methionine-R-sulfoxide reductase B4 protein (MsrB4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016581065.1	0.0	PREDICTED: uncharacterized protein LOC107878557 isoform X1
TrEMBL	A0A2G2Z4Q5	0.0	A0A2G2Z4Q5_CAPAN; Uncharacterized protein
STRING	Solyc07g062050.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.2	0.0	SH2 domain protein A