PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g14180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31980.4 Da PI: 9.3158 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.8e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +v+++G + +W+ +++ g+ R++ +c++rw +yl CA07g14180 14 KGPWTPDEDQKLLAYVEEHGYPcSWSDFPARAGLQRCGRSCRLRWINYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+ +++++++lG++ W++Ia++++ +R+++++k++w++ CA07g14180 68 RGKFSSEEERTILRLHALLGNR-WSAIASHLP-NRSDNEIKNHWYT 111 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.55 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.551 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRSPCLDKE GLKKGPWTPD EDQKLLAYVE EHGYPCSWSD FPARAGLQRC GRSCRLRWIN 60 YLRPNIKRGK FSSEEERTIL RLHALLGNRW SAIASHLPNR SDNEIKNHWY TRLKKRLINM 120 GIDPMTHQPR RDGSNYKSLA SLSHMAEWET ARLEAEARLV RKRSTYNNNN KNNYNIILHQ 180 RRPCLDILKA WQMSGTKFLT INDISSMLLD GFLTNPRKTY TRNSPTPSMF NIEKSVEVGE 240 YLCPLFEDAI TKDNNLVQTE FSIIEGLADL FPEYD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-27 | 12 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468639 | 1e-72 | CU468639.4 S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 1e-72 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579476.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9LE63 | 7e-82 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A2G2Z3S3 | 0.0 | A0A2G2Z3S3_CAPAN; Transcription factor | ||||
STRING | Solyc04g005600.1.1 | 1e-142 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 3e-81 | myb domain protein 16 |