PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g14120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SBP | ||||||||
Protein Properties | Length: 106aa MW: 11722.3 Da PI: 9.3281 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 46.7 | 8.7e-15 | 37 | 71 | 2 | 36 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEET CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvs 36 Cq+e+C++dl++ak+yh+rhkvCe h+k++vv+ CA07g14120 37 CQAEKCSVDLNDAKQYHKRHKVCENHAKSQVVVXX 71 ******************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-13 | 30 | 70 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 11.007 | 34 | 105 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-13 | 36 | 70 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-9 | 37 | 70 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
LKSMEKNDDM LSIIEDAKKK NKKGSPNSSS SSLTRSCQAE KCSVDLNDAK QYHKRHKVCE 60 NHAKSQVVVX XXXGNASANN AAGLITCSIF SFLNHNFILH LFYFI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579477.1 | 8e-42 | PREDICTED: squamosa promoter-binding protein 1-like | ||||
TrEMBL | A0A2G2Z3W9 | 2e-66 | A0A2G2Z3W9_CAPAN; Squamosa promoter-binding-like protein 3 (Fragment) | ||||
STRING | PGSC0003DMT400082789 | 5e-17 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 1e-10 | squamosa promoter binding protein-like 8 |