PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g13030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38470.1 Da PI: 6.1639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++++G+g+W+t ++ g+ R++k+c++rw +yl CA07g13030 14 KGPWTPEEDNKLIQYIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ +E+e +++++ lG++ W++Ia++++ gRt++++k++w+++ CA07g13030 67 RGRFSFDEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.653 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.00E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.752 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRSPCCDKN GLKKGPWTPE EDNKLIQYIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFDEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG 120 IDPVTHSPRL DLLDLSSLLN STQFNLSSLL GLQALINPEV FRLATTLLAS HNESSPELLL 180 QKLQENNQMF SNSQLQNHEG SELLLQKLQQ NQLLNAQVQN QPQFFQYQNQ IQEIPNFTTT 240 QNVACSSSLS QPMQLLGHVD ESYLMNGQML PPQNYGYCNS DASDNSTFQS LNNNSSNQNF 300 SLDNSVLSTP TEDEKESYCS NLMKFEIPES LNFDDFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579460.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
Swissprot | Q9LDR8 | 1e-103 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1U8H7Z4 | 0.0 | A0A1U8H7Z4_CAPAN; Transcription factor MYB39 | ||||
TrEMBL | A0A2G2Z3I3 | 0.0 | A0A2G2Z3I3_CAPAN; myb-related protein 315-like | ||||
STRING | PGSC0003DMT400047219 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 5e-90 | myb domain protein 74 |
Publications ? help Back to Top | |||
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