PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g12980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 167aa MW: 18548.1 Da PI: 4.6864 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.2e-09 | 1 | 23 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia++++ gR+++++k++w++ CA07g12980 1 WSAIAAHLP-GRSDNEIKNHWHTT 23 *********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.5 | 1 | 28 | IPR017930 | Myb domain |
CDD | cd00167 | 9.61E-7 | 1 | 24 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-11 | 1 | 25 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-7 | 1 | 23 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.08E-7 | 1 | 34 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
WSAIAAHLPG RSDNEIKNHW HTTLKKHATH NATNSSSDKS SKKCSNNKNK NTKSNASKDA 60 SPNNNMHENA ILESSEWSPK ESLSDQELIS SYSTSVDYQN DVFQEENLVE ITSGSFWTEP 120 FVVESFNSPR IDFLGPPSID YGLVCPPSPF IGEGFVSSFD LDDYNW* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579456.1 | 1e-118 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A2G2Z3I0 | 1e-117 | A0A2G2Z3I0_CAPAN; Myb-related protein (Fragment) | ||||
STRING | Solyc07g053230.2.1 | 2e-50 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 2e-09 | myb domain protein 15 |