PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g12950

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 241aa MW: 27876.3 Da PI: 7.1971

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g12950	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l +v+++G ++W+ +++ g+ R++k+c++rw ++l CA07g12950 14 RGAWSEDEDNKLRAYVERFGHPNWRQLPKYAGLMRCGKSCRLRWMNHL 61 89********************************************97 PP
2	Myb_DNA-binding	50	6.7e-16	67	122	1	47
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 +g+ + eE++l+++++k+lG++ +W+ Ia+ ++ gR+++++k++w+ + CA07g12950 67 KGNYSLEEEQLIIKLHKELGNRnvpnrpnksfRWSVIAANLP-GRSDNDVKNHWHAH 122 7899************************************.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.538	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	5.99E-25	11	119	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.74E-10	16	61	No hit	No description
SMART	SM00717	1.2E-14	66	125	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.006	66	127	IPR017930	Myb domain
Pfam	PF00249	2.9E-14	67	122	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-21	69	126	IPR009057	Homeodomain-like
CDD	cd00167	3.38E-10	69	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MVRTPIIDKN GIKRGAWSED EDNKLRAYVE RFGHPNWRQL PKYAGLMRCG KSCRLRWMNH 60 LRPGLKKGNY SLEEEQLIIK LHKELGNRNV PNRPNKSFRW SVIAANLPGR SDNDVKNHWH 120 AHLKKRVRLT NCINNSSMSM EQFTESTQSG SSQLDERSAS MNVVVDTSPT LLPTSFPEVS 180 SSDLYSITDW IEEESMEQLP ILSSMELLAA DTFSWTNYPI DNFQTESFDH FWTQPYDTFF 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-23	14	127	7	108	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	4e-51	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016579455.1	1e-169	PREDICTED: myb-related protein Myb4-like
TrEMBL	A0A2G2Z3Q1	1e-168	A0A2G2Z3Q1_CAPAN; Myb-related protein Myb4
STRING	PGSC0003DMT400097604	5e-93	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	4e-50	myb domain protein 14