PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g11330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 23144.9 Da PI: 6.6683 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 26 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + +r++lg+f+tae+Aa+a++ a+++l+g CA07g11330 26 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 76 68********.**********72....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.5E-14 | 26 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-19 | 26 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 27 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRHRKSSELK RPGSDNLKQP ETDPPPRYRG VRKRPWGRFA AEIRDPIKKT RVWLGTFDTA 60 EDAARAYDDA ARALRGPKAK TNFNPLMLTT HEEDEDPPHP PTATGQFELF PRPACSSMSS 120 TLESSSGPRV GSGSGLTRMM KIPRPVYPPE DCRSDCDSSS SVVDDRCEVD HTSSFLNTKQ 180 PLPFDLNLPP PPSLDFDADD LHVTALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 28 | 92 | 6 | 70 | ATERF1 |
3gcc_A | 3e-21 | 28 | 92 | 6 | 70 | ATERF1 |
5wx9_A | 2e-20 | 27 | 83 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580609.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 3e-36 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A1U8HJA3 | 1e-150 | A0A1U8HJA3_CAPAN; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A2G2Z323 | 1e-150 | A0A2G2Z323_CAPAN; ethylene-responsive transcription factor 3-like | ||||
STRING | XP_009630856.1 | 2e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13779 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 8e-21 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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