PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g11330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 209aa    MW: 23144.9 Da    PI: 6.6683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g11330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202676155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr ++ +gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+++l+g
  CA07g11330 26 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 76
                68********.**********72....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-142676IPR001471AP2/ERF domain
CDDcd000181.19E-192683No hitNo description
Gene3DG3DSA:3.30.730.101.3E-322784IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-222784IPR016177DNA-binding domain
SMARTSM003804.7E-372790IPR001471AP2/ERF domain
PROSITE profilePS5103223.3272784IPR001471AP2/ERF domain
PRINTSPR003672.0E-112839IPR001471AP2/ERF domain
PRINTSPR003672.0E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRHRKSSELK RPGSDNLKQP ETDPPPRYRG VRKRPWGRFA AEIRDPIKKT RVWLGTFDTA  60
EDAARAYDDA ARALRGPKAK TNFNPLMLTT HEEDEDPPHP PTATGQFELF PRPACSSMSS  120
TLESSSGPRV GSGSGLTRMM KIPRPVYPPE DCRSDCDSSS SVVDDRCEVD HTSSFLNTKQ  180
PLPFDLNLPP PPSLDFDADD LHVTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212892670ATERF1
3gcc_A3e-212892670ATERF1
5wx9_A2e-2027831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580609.11e-151PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE43e-36ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A1U8HJA31e-150A0A1U8HJA3_CAPAN; Ethylene-responsive transcription factor 3
TrEMBLA0A2G2Z3231e-150A0A2G2Z323_CAPAN; ethylene-responsive transcription factor 3-like
STRINGXP_009630856.12e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137791113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-21ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]