PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g11300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HRT-like | ||||||||
Protein Properties | Length: 518aa MW: 58056.9 Da PI: 10.126 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 54.3 | 2.3e-17 | 268 | 298 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P+ g+KRC+eHKGm++ CA07g11300 268 ICGVALGHGSVCIRPPIAGNKRCAEHKGMKV 298 8****************************97 PP | |||||||
2 | HRT-like | 46.3 | 7e-15 | 326 | 355 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ Gs+C r+P +g+KRC eHKG+R CA07g11300 326 ICGFILDCGSPCARKPFQGNKRCLEHKGRR 355 8****************************9 PP | |||||||
3 | HRT-like | 58.5 | 1.1e-18 | 415 | 445 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+dGs+C+rqP+ gRKRCe HKGmR+ CA07g11300 415 ICGVHLNDGSFCTRQPAVGRKRCEGHKGMRV 445 8*****************************7 PP | |||||||
4 | HRT-like | 48.1 | 1.9e-15 | 487 | 516 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++l +Gs+C+r+P +g+KRC++HKG++ CA07g11300 487 TCGATLHNGSFCRRKPSEGNKRCWQHKGRK 516 7***************************86 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MASADRSLII RLKREDCKRT KHDQAFSDWK ILIGPNDWED HLLGKEGAEK YRTQNLPNCT 60 SCSGVYELGI AVPWLRSTRL DPDHIVPVYV GKSDSVRIRL QRYGREGAHL ENGCSNSELH 120 DNEIISASKR AGLFTETFAR GFSIVYRWAP TNNNKDAERT EAQLLDKFDY AWNKGSNGVR 180 RHNDVLCKLD SISRATHLPA FIRKLQLSLE KQKGVRIKAC KPLLLKNGSD FHDSFKNTNF 240 LPQVFKFGRS QPRIVSFSFG VNDDPNTICG VALGHGSVCI RPPIAGNKRC AEHKGMKVNS 300 VNSKLIAEGN ESTRPCESRG EENAPICGFI LDCGSPCARK PFQGNKRCLE HKGRRNRGFV 360 SQTMTDKIGR STYNPILEYR TSSSKDYQQI LSSRTDIQQF QHFSSSLIHH NHNVICGVHL 420 NDGSFCTRQP AVGRKRCEGH KGMRVKEPIS KQLGSEIPSV FAGSAAKISS GKKHWNIDTP 480 AVNHYPTCGA TLHNGSFCRR KPSEGNKRCW QHKGRKK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580607.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A0A1U8HAY8 | 0.0 | A0A1U8HAY8_CAPAN; protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
STRING | PGSC0003DMT400083817 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7741 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 5e-95 | effector of transcription2 |