PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g10940
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 542aa    MW: 60474.9 Da    PI: 6.7096
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g10940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.22.2e-1361715411374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+avs+g+l  aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e +   s e l+++++++e++P++kf+++ aN
  CA07g10940 171 LKQVLIACAKAVSDGELLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHVLYEICPYFKFGYMSAN 266
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHiiDf+i qG QW++++qa+a+Rp+gpp++R+Tg+++++s   +   l  +g+rL+k+A++++vpfef++ +a +  d++le+L +
  CA07g10940 267 GAIAEAMKDENRVHIIDFQIAQGSQWVPMIQAFAARPGGPPHIRMTGIDDSTSAyaRGGGLDIVGKRLSKLAKTFKVPFEFHP-AAMSGCDVQLENLGI 364
                 **************************************************998899999************************.8999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p EalaVn+++ lh+++desvs+ ++rd++L++vk+lsPkvv++veqe+++n++ F+ rfle+l+yys++f+s++++lpr ++eri+vE+++l+r++v
  CA07g10940 365 QPSEALAVNFAFTLHHMPDESVSTVNHRDRLLRMVKNLSPKVVTLVEQESNTNTAAFFPRFLETLDYYSSMFESIDMTLPRGHKERINVEQHCLARDVV 463
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++  yr+ee++g+l+lgW++r Lv+ +aW+
  CA07g10940 464 NIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKTLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 541
                 **************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.049145522IPR005202Transcription factor GRAS
PfamPF035147.7E-134171541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQASRRRRTA MSNTLYCEPL QKAEAYCLPQ FQTLDSHLSY ISGSHVGNHS LQTYRDRYCM  60
LDSSSATGNY AIYHSPSTTS FSSNGSTTCN QESQPYLSDV RHSPETNYGS PISGSCITDD  120
VADFMHKLKE LETVMLGPEL ESYDNSLPSN IASPEIDSWR QIMLAIPRRD LKQVLIACAK  180
AVSDGELLTA QVLISELRQM VSVSGEPIQR LGAYILEGLV ARLAASGSSI CKSLRCKEPA  240
SFELLSYMHV LYEICPYFKF GYMSANGAIA EAMKDENRVH IIDFQIAQGS QWVPMIQAFA  300
ARPGGPPHIR MTGIDDSTSA YARGGGLDIV GKRLSKLAKT FKVPFEFHPA AMSGCDVQLE  360
NLGIQPSEAL AVNFAFTLHH MPDESVSTVN HRDRLLRMVK NLSPKVVTLV EQESNTNTAA  420
FFPRFLETLD YYSSMFESID MTLPRGHKER INVEQHCLAR DVVNIIACEG IERVERHELL  480
GKWKSRFRMA GFSPYPLSSL VNATIKTLLE SYSDKYRLEE RDGALYLGWM NRDLVASCAW  540
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-621735416375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145720.0BT014572.1 Lycopersicon esculentum clone 134027R, mRNA sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580540.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016580541.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U8HAN90.0A0A1U8HAN9_CAPAN; Scarecrow-like protein 13
TrEMBLA0A1U8HAZ70.0A0A1U8HAZ7_CAPAN; scarecrow-like transcription factor PAT1
STRINGSolyc07g047950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]