PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g08980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25711.2 Da PI: 8.4427 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.4e-13 | 28 | 70 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L CA07g08980 28 VSERNRRKKVNERLFALRAVVPNiS------KMDKASIIKDAIDYIQNL 70 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-17 | 21 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.215 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-12 | 24 | 75 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-15 | 27 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-14 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-11 | 28 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
YFDEAISSYY DSSSPDGAQS SMASKNIVSE RNRRKKVNER LFALRAVVPN ISKMDKASII 60 KDAIDYIQNL HEQERRIRAE ILVLESGRSK KNSDVEFDQD GSFDSKAKRS KRLEQKYEYD 120 SSGSTTRSSP SSFPVDVLEL RVSSMGENTV VVSLTCSKRT DTMIKVCEVF ESLNIKIISA 180 NITAFSGRLL KTAFIEVTVS FFFFFVTLFL CFILSFVFFS TIDFFQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253645 | 4e-69 | AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence. | |||
GenBank | AC253676 | 4e-69 | AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence. | |||
GenBank | HG975446 | 4e-69 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 4e-69 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550047.1 | 1e-139 | PREDICTED: transcription factor bHLH35-like isoform X1 | ||||
Refseq | XP_016550058.1 | 1e-139 | PREDICTED: transcription factor bHLH35-like isoform X3 | ||||
Swissprot | Q2HIV9 | 2e-67 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A1U8ES37 | 1e-138 | A0A1U8ES37_CAPAN; transcription factor bHLH35-like isoform X1 | ||||
TrEMBL | A0A1U8ESD2 | 1e-138 | A0A1U8ESD2_CAPAN; transcription factor bHLH35-like isoform X3 | ||||
STRING | XP_009760780.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 3e-66 | bHLH family protein |