PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g06580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 130aa    MW: 15149.6 Da    PI: 6.5129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g06580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.81.1e-28212894226
        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                 s++ a + I   + +++ +HiiDf+i + +QW +++q ++ Rp  pp+lRi g++ p+++   +e+ ee+g+rLak+ ++++v fe+nv+        +
  CA07g06580   2 SNIFASKSIGMLTREATSIHIIDFGILYDFQWSCFIQGISFRPTRPPKLRIIGIDFPQPEfrPTERFEEIGHRLAKYYKRFNVLFEYNVI--------Q 92 
                 67889999999999********************************************9999**************************95........8 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                 l++L++++gE+laVn+ ++l +++de+ +  s+rd+
  CA07g06580  93 LDDLKINKGEMLAVNCLYRLINVPDETICEISPRDD 128
                 8999***********************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.6121129IPR005202Transcription factor GRAS
PfamPF035143.6E-262128IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSNIFASKSI GMLTREATSI HIIDFGILYD FQWSCFIQGI SFRPTRPPKL RIIGIDFPQP  60
EFRPTERFEE IGHRLAKYYK RFNVLFEYNV IQLDDLKINK GEMLAVNCLY RLINVPDETI  120
CEISPRDDV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165701.14e-65PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
SwissprotQ9LTI56e-38SCL11_ARATH; Scarecrow-like protein 11
SwissprotQ9SNB85e-38SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A2G2Z2C82e-90A0A2G2Z2C8_CAPAN; Uncharacterized protein
STRINGMigut.D02077.1.p1e-47(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.25e-41GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]