PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g06110

Common Name

orf301

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 279aa MW: 30704.3 Da PI: 10.1782

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g06110	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.7	2.2e-29	161	215	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++IlkRRq Rak ++++kl k+rkpylheSRh+hA++R RgsgG F CA07g06110 161 PIYVNAKQYSAILKRRQVRAKRQAQNKL-VKNRKPYLHESRHRHAMKRVRGSGGHF 215 9*************************.***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.1E-32	157	218	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.474	158	218	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-22	161	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-25	161	215	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-22	192	215	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSCSSIWNSS DQLEHAPSKK TRVESALKHH SDIKKLESEF QDQDSTSTLS TGQSNHVEAA 60 MGKSKTVLQN LTAHPGWGGI LDVQAESGTK ASLSGKSATN TLPQPQVHHD HPTACLSYPW 120 ADTYFGRLVA TYGSNAIIYP QMVGVTSTRV ALPLECTESL PIYVNAKQYS AILKRRQVRA 180 KRQAQNKLVK NRKPYLHESR HRHAMKRVRG SGGHFLNTKN IQQSKPSSPK HDRNIFNRQA 240 GGNISSYMVQ HSESGSWGTS TQSGTDVTSI FNGDDMFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-18	161	219	4	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	208	RHRHAMKRVR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ865409	0.0	KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBank	KJ865410	0.0	KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553481.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like, partial
TrEMBL	A0A1U8F4C1	0.0	A0A1U8F4C1_CAPAN; nuclear transcription factor Y subunit A-3-like
STRING	Solyc08g062210.2.1	1e-175	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4800	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	2e-34	nuclear factor Y, subunit A8

Link Out ? help Back to Top
Entrez Gene	19989016

Publications ? help Back to Top
Jo YD,Choi Y,Kim DH,Kim BD,Kang BC Extensive structural variations between mitochondrial genomes of CMS and normal peppers (Capsicum annuum L.) revealed by complete nucleotide sequencing. BMC Genomics, 2014. 15: p. 561 [PMID:24996600]