PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g04070
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 104aa    MW: 11998 Da    PI: 10.7519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g04070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.2e-101243132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W + Ed++l+++v+ +G g+W+tI+++ g
       CA07g04070 12 RGFWKPAEDLILKNYVETHGEGNWATISEKSG 43
                     799**************************988 PP
2Myb_DNA-binding422.1e-1363103143
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++
       CA07g04070  63 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNF 103
                      6789******************.*********.********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-10641IPR009057Homeodomain-like
PROSITE profilePS512948.771750IPR017930Myb domain
SuperFamilySSF466896.39E-199102IPR009057Homeodomain-like
SMARTSM007170.851154IPR001005SANT/Myb domain
PfamPF002497.5E-71243IPR001005SANT/Myb domain
CDDcd001679.56E-51541No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1655103IPR009057Homeodomain-like
PROSITE profilePS5129418.36858103IPR017930Myb domain
SMARTSM007170.003762103IPR001005SANT/Myb domain
PfamPF002499.1E-1263103IPR001005SANT/Myb domain
CDDcd001673.79E-866103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MRDKEVKKRM KRGFWKPAED LILKNYVETH GEGNWATISE KSGILKSFRL ITGGNYLRPN  60
IIRGMMSEDE KDLIIRLHKL LGNRWSLIAG RLPGRTDNEV KNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-131010325119MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511VKKRMKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220542e-87AF122054.1 Solanum tuberosum clone 9 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553170.19e-56PREDICTED: transcription factor MYB82-like
RefseqXP_016556998.18e-56PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF76e-43MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A2G2Z0S12e-68A0A2G2Z0S1_CAPAN; Anthocyanin regulatory C1 protein
STRINGPGSC0003DMT4000794167e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-45myb domain protein 82