PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g03650
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 280aa    MW: 31764.2 Da    PI: 6.2877
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g03650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l++++ ++G g+W++++   g+ R +k+c++rw +yl
       CA07g03650 15 KGLWSPDEDDKLKNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.42.9e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ ++ +++++G++ W+ Ia++++ gRt++++k++w++yl
       CA07g03650  68 RGAFSLEEEDTILTLHAMFGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 113
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-221065IPR009057Homeodomain-like
PROSITE profilePS5129417.1111062IPR017930Myb domain
SuperFamilySSF466893.48E-2913109IPR009057Homeodomain-like
SMARTSM007171.0E-111464IPR001005SANT/Myb domain
PfamPF002491.2E-131562IPR001005SANT/Myb domain
CDDcd001675.72E-101862No hitNo description
PROSITE profilePS5129426.8363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2666117IPR009057Homeodomain-like
SMARTSM007173.2E-1667115IPR001005SANT/Myb domain
PfamPF002493.1E-1668113IPR001005SANT/Myb domain
CDDcd001672.57E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGCKAAEKPK QKHKKGLWSP DEDDKLKNYI IKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSLEEEDTIL TLHAMFGNKW SQIAQHLPGR TDNEIKNHWH SYLKKRVTKM  120
AENEGDTKSD NTESSPSLKK LTPQNSSLDS FEHREGSLAD SDQSIYPRES QKSNLPKVLF  180
AEWLSLDQFN GQEFHNSGNF EPSTNNFGYN NSELHDIFMH SLPMNNGSYG NGVNQEVNNG  240
TVVDDIFQAQ LKFEDPMSAN GFEEFMSGEF NINDDVMYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22151177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-131HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567835.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A1U8G9M00.0A0A1U8G9M0_CAPAN; Transcription factor MYB46
TrEMBLA0A2G2Z0U60.0A0A2G2Z0U6_CAPAN; transcription factor LAF1-like
TrEMBLA0A2G3CW610.0A0A2G3CW61_CAPCH; Transcription factor MYB46
STRINGPGSC0003DMT4000370800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-61myb domain protein 19