PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g03300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 40403.3 Da PI: 4.4672 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.1e-18 | 37 | 87 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr++ +g+WvAeIr+p + r + ++lg+f+ ++Aa a++aa++kl+g CA07g03300 37 CKYKGVRQRT-WGKWVAEIREP---N-RgACVWLGTFDNSYDAAVAYDAAALKLYG 87 79*****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.72E-17 | 37 | 98 | No hit | No description |
Pfam | PF00847 | 4.1E-11 | 37 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-26 | 38 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-30 | 38 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-18 | 38 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.982 | 38 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-7 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-7 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MSSKFSLSPQ RRSKKPTQAT SQKGRMKGKG GPENATCKYK GVRQRTWGKW VAEIREPNRG 60 ACVWLGTFDN SYDAAVAYDA AALKLYGPDK AQLNLPHLYN IPAQAQHESS RPVVTPTPAP 120 VPAPADPSPS IYNVASPSTW NVKNDPSVYF NNDFSSTDFS ATSISLDMNE KADHEEFVEN 180 VSSRPAPTLA PASFSLVPSP SVYNVASPST WNVENDPSLY LNNDFSSTDF SATSFSLDMN 240 EKADHEEFVK NESSRSAPTP AATPVSLVPS PSIYNVASPS TWNVEIDPSL YFNNDFEIDP 300 SLYFNNDFAS TDFSATSFSL DMNEKADHEE FVEKNNQISK ELGEDMWSDL NLLPEINDTY 360 HRMGGGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 39 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579319.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A2G2Z0H6 | 0.0 | A0A2G2Z0H6_CAPAN; Dehydration-responsive element-binding protein 2D |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 8e-33 | ERF family protein |