PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g25980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 251aa    MW: 28374.7 Da    PI: 4.9989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g25980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.51.2e-21100150155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAak +++a+ kl+g
  CA06g25980 100 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAKVYDKAAVKLKG 150
                 59********.**********84....35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.4E-956250IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.35E-33100158No hitNo description
Gene3DG3DSA:3.30.730.101.4E-30101158IPR001471AP2/ERF domain
PROSITE profilePS5103224.54101158IPR001471AP2/ERF domain
SMARTSM003806.9E-38101164IPR001471AP2/ERF domain
PfamPF008473.0E-14101150IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22101159IPR016177DNA-binding domain
PRINTSPR003674.6E-10102113IPR001471AP2/ERF domain
PRINTSPR003674.6E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MISSMDTPPI IKFTQHVVTT NKHVYENDEK SNPHTKVIQK VVRIILTDPD ATDSSDDEGR  60
NTVRRVKRHV TEINLMPSPK PITEKKRRSA SPETDVTRRK KFRGVRQRPW GRWAAEIRDP  120
TRGKRVWLGT YDTPEEAAKV YDKAAVKLKG SDAVTNFPRV LTTELTVTET ETESVADGGE  180
KSDDAVTLSP TSVLVNGDLT PFDNFGFCEV DDFGFDVDSF FRLPEFGMPE KYYGDEFGEF  240
DFDDFALEAR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21100158463ATERF1
3gcc_A3e-21100158463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185100KRRSASPETDVTRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577598.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-121PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2G2ZEE80.0A0A2G2ZEE8_CAPAN; Uncharacterized protein
STRINGXP_009607079.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-38cytokinin response factor 4