PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g25920

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 681aa MW: 76867 Da PI: 6.4334

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g25920	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.8	2.7e-108	306	676	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cAea ++ + + ++L ++++++sp gd++ Rla yf++AL+ar a+ ++ + ++++ + +e l+a++++ ++P+ ++s++ aN+ CA06g25920 306 TSLLTRCAEAAATYNSKTFIQVLDKIKQHSSPFGDATARLAYYFANALEARFAG-GD-----ATLATSKRISAAEFLKAYQIYIAACPFKRMSNIFANK 398 689*************************************************.22.....2223333345899******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 I + ++ + rvHiiDf+i +G+QWp++++ ++ Rp+gpp+lRiTg++ p++g +e++eetg+ L++++++++vpfe+++ +ak++++++le+L+++ CA06g25920 399 SIAKLTSASPRVHIIDFGILYGFQWPCIIHGISLRPGGPPRLRITGIDFPQPGfrPAERVEETGRHLEEYCKRFNVPFEYKA-LAKKWDEIKLEDLDID 496 ************************************************9*************************.6*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++E+l+Vn+ ++l++++de+v ++ +r++vL+l+k+++P+ +v+ +a +n++ F +rf eal ++s+ fd++ea++pre+e r++ E+e++gr+ CA06g25920 497 RDETLVVNCLYRLKNVHDETVVTHGnknPREAVLNLIKEINPHYFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMPREDEGRMTFEQEVFGRD 595 **************99877655569****************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +++++ + v+e+s+++++gWk+r ++++S+W+ CA06g25920 596 IMNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLDQDIVKEVKTKVKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 676 ************************************************888***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.553	279	656	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-106	306	676	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MNTSTHFPSD HRSSDRFEFC HRFALNNNLG IASDQFSRRG GGVGGGGVND VFCFPRSMPP 60 SDEELVIGSG SDRTVVEGDY FDGVFKYIQQ MLMEDQDDLE NRPCMFPDCI ALQAAEKSFY 120 DVLNPPPVHR DSPHFQDDAY RDAVNQFVES TSNADLDGDQ CSLLYASGLN NYHQAGAANS 180 GYVNSADANN YRQANEANGV NDQGVKSNKK HTREENGDTS KGGNSKQFAS NGAEETGDKE 240 AEEHYDKALL CPGMNPSFYE NRSKTATSLD NAAWDKQKSS HIKLSKRGRP RGTKNGMKKN 300 EVVDLTSLLT RCAEAAATYN SKTFIQVLDK IKQHSSPFGD ATARLAYYFA NALEARFAGG 360 DATLATSKRI SAAEFLKAYQ IYIAACPFKR MSNIFANKSI AKLTSASPRV HIIDFGILYG 420 FQWPCIIHGI SLRPGGPPRL RITGIDFPQP GFRPAERVEE TGRHLEEYCK RFNVPFEYKA 480 LAKKWDEIKL EDLDIDRDET LVVNCLYRLK NVHDETVVTH GNKNPREAVL NLIKEINPHY 540 FVHGIVNAMY NASFFTTRFR EALFHFSSQF DMFEATMPRE DEGRMTFEQE VFGRDIMNVI 600 ACEGTERVER PESYKQWSVR NQIAGFRQLP LDQDIVKEVK TKVKMFYHAD FLVDEDSNWM 660 LQGWKGRIMY ALSVWEPVHK *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MNTSTHFPSD HRSSDRFEFC HRFALNNNLG IASDQFSRRG GGVGGGGVND VFCFPRSMPP  60
SDEELVIGSG SDRTVVEGDY FDGVFKYIQQ MLMEDQDDLE NRPCMFPDCI ALQAAEKSFY  120
DVLNPPPVHR DSPHFQDDAY RDAVNQFVES TSNADLDGDQ CSLLYASGLN NYHQAGAANS  180
GYVNSADANN YRQANEANGV NDQGVKSNKK HTREENGDTS KGGNSKQFAS NGAEETGDKE  240
AEEHYDKALL CPGMNPSFYE NRSKTATSLD NAAWDKQKSS HIKLSKRGRP RGTKNGMKKN  300
EVVDLTSLLT RCAEAAATYN SKTFIQVLDK IKQHSSPFGD ATARLAYYFA NALEARFAGG  360
DATLATSKRI SAAEFLKAYQ IYIAACPFKR MSNIFANKSI AKLTSASPRV HIIDFGILYG  420
FQWPCIIHGI SLRPGGPPRL RITGIDFPQP GFRPAERVEE TGRHLEEYCK RFNVPFEYKA  480
LAKKWDEIKL EDLDIDRDET LVVNCLYRLK NVHDETVVTH GNKNPREAVL NLIKEINPHY  540
FVHGIVNAMY NASFFTTRFR EALFHFSSQF DMFEATMPRE DEGRMTFEQE VFGRDIMNVI  600
ACEGTERVER PESYKQWSVR NQIAGFRQLP LDQDIVKEVK TKVKMFYHAD FLVDEDSNWM  660
LQGWKGRIMY ALSVWEPVHK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-45	305	675	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577604.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	O80933	1e-159	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1U8HB18	0.0	A0A1U8HB18_CAPAN; Scarecrow-like protein 9
TrEMBL	A0A2G2ZEI2	0.0	A0A2G2ZEI2_CAPAN; scarecrow-like protein 14
STRING	PGSC0003DMT400078286	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-161	GRAS family protein