PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g25110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 34474.5 Da PI: 9.7103 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 24 | 68 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W ++a++++ g++ +++ + CA06g25110 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKSVGDVIRQYK 68 8********************************.***999988875 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 131 | 175 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky CA06g25110 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.518 | 20 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 3.0E-9 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.88E-11 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-7 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 2.4E-6 | 24 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.89 | 124 | 180 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.31E-17 | 125 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 127 | 179 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-12 | 128 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 129 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-11 | 131 | 176 | No hit | No description |
Pfam | PF00249 | 9.8E-13 | 131 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEILSPAPYL ANPSWFLDEG KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKSV 60 GDVIRQYKEL EDDVSRIEAG LITIPGYSTS PFTLEWGNSH SFDGYKQTYV VGGKRPLSSR 120 PPEQERKKGI PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL 180 SGGKDKRRAS IHDITTINLH DNQTSSPDYQ KPTSPDQPAV ISQQPKSAAN AVHKMPFQWN 240 QANNGTAMGF NSAQGSLFMS PLYGGNSYGN NKMQSQSLQR GALHEPYFGS QSMNFQLQSA 300 HQYHQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-14 | 20 | 90 | 6 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577712.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-148 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G2ZE22 | 0.0 | A0A2G2ZE22_CAPAN; Transcription factor DIVARICATA | ||||
STRING | PGSC0003DMT400078029 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-103 | MYB family protein |
Publications ? help Back to Top | |||
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