PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24770
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family G2-like
Protein Properties Length: 294aa    MW: 32633.7 Da    PI: 6.5091
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24770genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57.3e-29137190155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rF+e+v++L G+++A+Pkti++lm+v gLt+e+v+SHLQkYRl
  CA06g24770 137 RPRLVWTPQLHKRFIEVVAHL-GIKNAVPKTIMQLMNVGGLTRENVASHLQKYRL 190
                 59*******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.572134193IPR017930Myb domain
SuperFamilySSF466892.69E-19134194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28136195IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-23138191IPR006447Myb domain, plants
PfamPF002492.1E-8140189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGEEVVTKLT DYDSNGVNDD RLLWEAGLPS ADDLTPLTLQ LIPSELAHAF RISPESSKTM  60
NDVNRASQNT FASLQRWHSQ DMASMNREET VTERDETDLV RQGSDPKKLR RVESGGTDEA  120
ADADSALCSE KFETVKRPRL VWTPQLHKRF IEVVAHLGIK NAVPKTIMQL MNVGGLTREN  180
VASHLQKYRL FTKRMQSNEE PSSSPDHLCT SRGATPQSLR ESSESCHPHN TNGHMGMPTM  240
MPYQPQMMPM PMMMGMTNGG HVGMPVGYAG GPPAGFHHPY NFGYYHPVAS HDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-31137193157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577759.10.0PREDICTED: transcription factor PCL1-like
RefseqXP_016577760.10.0PREDICTED: transcription factor PCL1-like
SwissprotQ9LTH47e-64PCLL_ARATH; Transcription factor BOA
SwissprotQ9SNB49e-64PCL1_ARATH; Transcription factor LUX
TrEMBLA0A2G2ZE450.0A0A2G2ZE45_CAPAN; Transcription factor LUX
STRINGSolyc06g076350.2.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35802343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.26e-63G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]