PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g24710

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 273aa MW: 31256 Da PI: 7.0456

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g24710	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.6	3.8e-78	2	269	42	316
GRAS 42 aayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp 140 a+yf+ AL+arla+++ ely+a+++++ + ++ l+a+++++ +s++ a + I + +++ +HiiDf+i +G+QWp+++q ++ Rp+gpp CA06g24710 2 AHYFADALEARLAGTGIELYAAFAMRTIT---AADILKAFQVYV-----TALSNIFAGESIGMLTREATSIHIIDFGILYGFQWPCFIQGISLRPSGPP 92 9**********************9999...899999999986.....579******************************************* PP GRAS 141 slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 lRiTg++ p++g +e++eetg++Lak++++++vpfe+n+ +ak++++++l++L++++ E+l+Vn+ ++l +++de++s +s+rd+vL+l+k+++P+ CA06g24710 93 ILRITGIDFPQPGfrPAERVEETGRQLAKYCRRFNVPFEYNA-IAKKWDSIQLNDLKINKSEMLVVNCLYRLIYVPDETASENSPRDDVLRLIKQIKPD 190 ********9*************************.7*************************************************** PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 v+ + + hns+ F +rf eal +ys+lfd++ea++pre++er E++ +g+ei+n+va eg++r+er e +++W+ CA06g24710 191 VFLHGIINGTHNSSFFETRFKEALFHYSSLFDMMEATVPRENQERLLFEKVNFGKEIMNIVAWEGTARVERPEPYKQWQ 269 ****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.671	1	272	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-75	2	269	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAHYFADALE ARLAGTGIEL YAAFAMRTIT AADILKAFQV YVTALSNIFA GESIGMLTRE 60 ATSIHIIDFG ILYGFQWPCF IQGISLRPSG PPILRITGID FPQPGFRPAE RVEETGRQLA 120 KYCRRFNVPF EYNAIAKKWD SIQLNDLKIN KSEMLVVNCL YRLIYVPDET ASENSPRDDV 180 LRLIKQIKPD VFLHGIINGT HNSSFFETRF KEALFHYSSL FDMMEATVPR ENQERLLFEK 240 VNFGKEIMNI VAWEGTARVE RPEPYKQWQL RN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-34	1	258	59	311	Protein SCARECROW
5b3h_A	2e-34	1	258	58	310	Protein SCARECROW
5b3h_D	2e-34	1	258	58	310	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576235.1	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 14
Swissprot	Q9XE58	1e-109	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1U8GYR0	0.0	A0A1U8GYR0_CAPAN; LOW QUALITY PROTEIN: scarecrow-like protein 14
TrEMBL	A0A2G2ZE12	0.0	A0A2G2ZE12_CAPAN; Scarecrow-like protein 34
STRING	Migut.D02077.1.p	1e-137	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-111	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]