PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 751aa    MW: 85026.6 Da    PI: 5.1087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.82.6e-1083767471373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+ v+++d +   + L+++++++sp gd+ qRla++f+ +++arla+++++ly+al+p++ +    +e+l+a+ ++  ++P+ k+s + aN
  CA06g24700 376 LRTLLVSCAQSVAADDRRTPYEQLKQIRQHCSPVGDAYQRLASVFADGIEARLAGTGTQLYAALAPKKIT---AAEKLKAYGVYLSACPFKKISIFFAN 471
                 6789****************************************************************99...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I   +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g   +e+le+tg+rLak++e+++vpfe+n+++ +++ed+++e+L++
  CA06g24700 472 KMIFHTASNARTLHLIDFGILYGFQWPILIQLLSQMPDGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFNVPFEYNAIAIQNWEDIKIEDLEL 570
                 *****************************************************9********************************************* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  +gE+laVn+ ++ ++llde+v l+s+rd+vL+l+++++P+++v +  + +++++ F++rf eal +ys+lfd+++a+lpr++++r   E+e+ +re++
  CA06g24700 571 VSGETLAVNCLFRFENLLDETVVLDSPRDAVLSLIRKMNPDIFVQAVINGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAM 669
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg+er+ r et+++W+ r ++aGFk +pl+e+ +++ ++ ++  + + +  +e+ +++++gWk+r + + S+W
  CA06g24700 670 NVIACEGSERVVRPETYKQWQVRNMRAGFKLLPLNEQLMQKLRCKVKAGYHRDFVFDEDGKWMLQGWKGRVVCASSCW 747
                 ************************************************99999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.045350728IPR005202Transcription factor GRAS
PfamPF035148.9E-106376747IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MDPRFVPLPD PVYTFEFDDQ INLSSFEGSL NPPQSYYNDY VAFGVPYTAS SLDIGNFAPS  60
PNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS LYEALGKTYP  120
PSPYRTPYYV DHQLESPSPD SIFQTYSDHS TSSSNTHSNS TDPHWIVDPG KSRLPFGRSP  180
SEYSTQPLLQ SNSARSHVSL NNSTNLNVHM DSLLNPNVLS NVFTDSESML QFKRGMEEAN  240
KFLPNVSQFV IDLDKYTFPP KVEEVNKEAV VKAEKDERNH SPNDTKGRKH QYPEDSDYED  300
ERSNKQSAIY VEEEVELSEM FDRVLLCTDK GETICGDVKS EMAVDKSLDQ NGQAHGSNGG  360
KTRAKKQGTK TEAVDLRTLL VSCAQSVAAD DRRTPYEQLK QIRQHCSPVG DAYQRLASVF  420
ADGIEARLAG TGTQLYAALA PKKITAAEKL KAYGVYLSAC PFKKISIFFA NKMIFHTASN  480
ARTLHLIDFG ILYGFQWPIL IQLLSQMPDG PPKLRITGID LPQPGFRPAE SLEQTGSRLA  540
KYCERFNVPF EYNAIAIQNW EDIKIEDLEL VSGETLAVNC LFRFENLLDE TVVLDSPRDA  600
VLSLIRKMNP DIFVQAVING SYSAPFFVTR FREALFHYST LFDMFDATLP RDDQQRLHFE  660
QEFYRREAMN VIACEGSERV VRPETYKQWQ VRNMRAGFKL LPLNEQLMQK LRCKVKAGYH  720
RDFVFDEDGK WMLQGWKGRV VCASSCWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-423597491379Protein SCARECROW
5b3h_D8e-423597491379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577766.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U8H2Q90.0A0A1U8H2Q9_CAPAN; Scarecrow-like protein 14
TrEMBLA0A2G2ZDY30.0A0A2G2ZDY3_CAPAN; scarecrow-like protein 14
STRINGSolyc06g076280.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]