PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g24550

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 315aa MW: 34339.7 Da PI: 9.84

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g24550	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	63	122	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ CA06g24550 63 EAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 122 6779*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-36	46	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	65	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MFFSYNSQMA INKLETLGWR IPNLQLCSPH LFRWGPVXXX XXXSIRPGSM VDRARLAKIP 60 LPEAGLKCPR CDSTNTKFCY FNNYNLSQPR HFCKTCRRYW TRGGALRSVP VGGGCRRNKR 120 SKSSTNNNSS KTTGSNVNST TTADPRQIGT STSASPSSCN TEIITGRHHF PHEQSPVQFT 180 PLMAAFQNLN HHYGGFQPPP LVSTQGAATL GHPEMGFQIG STTNSTNNLS APSGVSDHQW 240 RLPSLAANTN LYPFHQGEGI ESSSGNSIAH DDQGLNSTKQ FLGTMENNTN QYWGGNAWTG 300 FAGLNSSSSA SHLL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576870.1	0.0	PREDICTED: dof zinc finger protein DOF3.6
TrEMBL	A0A2G2ZE64	0.0	A0A2G2ZE64_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400078164	1e-128	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	5e-42	Dof family protein