PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g24340

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 226aa MW: 26352.4 Da PI: 6.3657

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g24340	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv +vk++G ++W+ a+ g++R++k+c++rw +yl CA06g24340 8 KGPWTEQEDLQLVFYVKMFGDRRWDFLAKVSGLKRSGKSCRLRWVNYL 55 79********************************************97 PP
2	Myb_DNA-binding	56.3	7.1e-18	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++l ++++ ++G++ W++Ia +++ gRt++++k++w++++ CA06g24340 61 RGKMTPHEEQLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 106 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.249	3	55	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-29	6	102	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-14	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	9.35E-9	10	55	No hit	No description
PROSITE profile	PS51294	26.358	56	110	IPR017930	Myb domain
SMART	SM00717	3.2E-17	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-16	61	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-25	63	108	IPR009057	Homeodomain-like
CDD	cd00167	1.72E-11	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVQEEVRKGP WTEQEDLQLV FYVKMFGDRR WDFLAKVSGL KRSGKSCRLR WVNYLNPGLK 60 RGKMTPHEEQ LVLQLHSKYG NRWSKIAGKL PGRTDNEIKN YWRTHMRKLA QDEKKNNKAS 120 ISPSSSNFSN CSSSSANSPA VDSSTEQNEL LQVVEANKTY EEDQNMMVYS MDEIWKEVES 180 SQEIETRNDL PVMASNTWDY CPDSLWMTHD HYYYDNTQDF SFFTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-28	5	108	1	103	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-28	1	108	20	126	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:16531467}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577798.1	1e-170	PREDICTED: transcription factor MYB59-like isoform X2
Swissprot	Q4JL84	5e-71	MYB59_ARATH; Transcription factor MYB59
TrEMBL	A0A1U8H9L1	1e-169	A0A1U8H9L1_CAPAN; Transcription factor MYB48
TrEMBL	A0A2G2WNH3	1e-169	A0A2G2WNH3_CAPBA; Transcription factor MYB48
TrEMBL	A0A2G2ZE38	1e-169	A0A2G2ZE38_CAPAN; transcription factor MYB59-like isoform X2
STRING	XP_009798979.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	1e-68	myb domain protein 59

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]