PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA06g24190

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WOX

Protein Properties

Length: 179aa MW: 20926.1 Da PI: 10.3407

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA06g24190	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.2	5.1e-17	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+++t++ql +L++l++k +p+ + + ++++l +++ ++V++WFqN++a++++ CA06g24190 3 RARWKPTPQQLMILQDLYRKgLTNPNSCQVQMITAHLsmygKIQWKNVFYWFQNHKARDRQ 63 89***************99***********************************996 PP
2	Wus_type_Homeobox	103.9	1e-33	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW Ptp+Q++iL++ly++Gl +Pn+ ++q ita+L+ yGki+ kNVfyWFQN+kaR+rqk CA06g24190 2 ARARWKPTPQQLMILQDLYRKGLTNPNSCQVQMITAHLSMYGKIQWKNVFYWFQNHKARDRQK 64 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.62	1	64	IPR001356	Homeobox domain
SMART	SM00389	9.0E-4	1	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.81E-10	3	64	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-14	3	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-6	3	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MARARWKPTP QQLMILQDLY RKGLTNPNSC QVQMITAHLS MYGKIQWKNV FYWFQNHKAR 60 DRQKMRKQMF QQMQKYTSSI TTTTNDVQIN PPSPSSASSS AAVNYQLYPN SPTIFLRQVP 120 LMFVYVHMIS YDSLSALTDV HARTCKIKYY YNLYVRLSEN NLYIFGKSLS FSNVYSNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269\|PubMed:11751640, ECO:0000269\|PubMed:15169755}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	8e-64	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576879.1	9e-84	PREDICTED: WUSCHEL-related homeobox 3-like
Swissprot	Q9SIB4	2e-29	WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBL	A0A2G2ZDR6	1e-130	A0A2G2ZDR6_CAPAN; WUSCHEL-related homeobox 5
STRING	PGSC0003DMT400016896	2e-48	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	4e-25	WOX family protein

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Niu L, et al. LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula. Plant J., 2015. 81(3): p. 480-92 [PMID:25492397] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086]