PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g22370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 399aa    MW: 43507.6 Da    PI: 5.3809
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g22370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-1098142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE+  ++++ + +G g+W++Iar    +Rt  q+ s+ qky
       CA06g22370  98 AWTVEEHRSFLRGLAIYGRGDWRSIARNCVITRTSMQVASHAQKY 142
                      7**************************99989************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.9859IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-51063IPR009057Homeodomain-like
PROSITE profilePS5129417.38891147IPR017930Myb domain
SuperFamilySSF466892.18E-1493147IPR009057Homeodomain-like
SMARTSM007172.7E-995145IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.3E-1495145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-996144IPR009057Homeodomain-like
PfamPF002497.2E-998142IPR001005SANT/Myb domain
CDDcd001674.52E-998143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSTDQICNST FWTKEEEKVF ETTLAIYFKG GDLLTKMEEA LPCKSRDDII NHYKILIEDV  60
DAIESGRVPL PNYPELPSHS NQKSRFPKTN LARRKGVAWT VEEHRSFLRG LAIYGRGDWR  120
SIARNCVITR TSMQVASHAQ KYFNRLKAVN KENRRMSIHD ITIVDAEVAG TSQVPYTEGM  180
IWPACGGSQA VACTSNQNML PPESTNAEQM IAVAGGESSG HTAAFVSGMN SMSDEDDFIL  240
HIDDLIVDPE DANESEILVD GGKSLLPSKQ PCTACSSGSN NHPIFRVGSE LGALITKQMD  300
EDYDFFSIFD DGEAPISHAM VSNAAHSGMT SFAVASNSAN NPPQNTVSAH SGRTSFAAAS  360
TGPNKAPLNM VSDHPQLPHV APSSNCVVGE WLQFKYYH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578013.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A1U8HA690.0A0A1U8HA69_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZDA10.0A0A2G2ZDA1_CAPAN; transcription factor DIVARICATA-like
STRINGXP_009609269.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-46MYB family protein