PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA06g22300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 506aa MW: 55341.6 Da PI: 5.3345 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l d+v+++G g+W+++ ++ g+ R++k+c++rw ++l CA06g22300 39 KGPWTSAEDAILMDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ CA06g22300 92 KGAFTPEEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.432 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-12 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.76E-10 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 26.474 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.54E-12 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MSMTSESDDR MASQDGVDSP SVEEACGGGI TGGGLPLKKG PWTSAEDAIL MDYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAE 120 LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DISFQAISEN KQNEELGAFS STDSQYPDFL 180 PMNNFEIPAV EFKRLEFNKQ LCPPALLDIP NGGILDIPGR SLLAQGLNSA YYSRSFLSTM 240 PPAKRIRGAE SLFSGLNGDC SPSKNEGSFP TCHQYQDDGS LLAQSMGFSS SFNQNLTSVH 300 HPSSSGVIPG SHAPLNGKTS SSEPLWAEKL ELPSFQSQMA SWGLSSSPLP SLESVDTVIQ 360 SPPTEHTESC NLSPRNSGLL DAVLYESQTM RASKSILHQE NSGDVVDNSC PDLHETGWET 420 YGDPISPLGH SAASVFSEYT PTSGSSPEEP QLVTMPGCKV KQEKFDFGPY DGKEDASDLI 480 FSRPDYLLES NCFGHMQKTA RSIWH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-32 | 34 | 140 | 1 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF175475 | 0.0 | EF175475.1 Solanum lycopersicum GAMYB-like2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016578021.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor GAMYB-like | ||||
TrEMBL | A0A2G3C6T9 | 0.0 | A0A2G3C6T9_CAPCH; Myb-related protein | ||||
STRING | Solyc06g073640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06100.1 | 2e-83 | myb domain protein 33 |